Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0420.Seq
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.66 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 358 GRQHRHLLRDPPALTAQAPRPGHRRL*PVEYDSAVKAIK--EIKHHH 492
           G  H H+   P    + A  P H+   P+ + S   AI+     HHH
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHH 466


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 374 ICCVTLLLSQHKLLDRVTAGCNRSST 451
           ICC T ++ +   + R +  CN SS+
Sbjct: 343 ICCKTRIIGRRSWVTRESQICNNSSS 368


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 326  VSTLDVTVADAVDNIDICCVTLLLSQHKLLDRVTA 430
            V+TL+      V  +    VTL+  Q K+++ VTA
Sbjct: 948  VTTLEAAARVTVQELTALGVTLVGHQKKIMNSVTA 982



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 168 APEMLGGRVKTLHPAV 215
           AP MLGGR  T +  V
Sbjct: 340 APHMLGGRTDTTYRVV 355


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 340 RDRCGRGRQHRHLLRDPPALTAQAPRP 420
           RDR GRGR   H +  P     Q P P
Sbjct: 316 RDRRGRGRSREHRI-IPSHYIEQIPAP 341


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 187  PPSISGALVMSDTS*TVRPAFRSGRGGTAT 98
            PPS     V S TS ++   ++SG  G A+
Sbjct: 1404 PPSAPVLYVTSSTSSSILLHWKSGHNGGAS 1433


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 187  PPSISGALVMSDTS*TVRPAFRSGRGGTAT 98
            PPS     V S TS ++   ++SG  G A+
Sbjct: 1400 PPSAPVLYVTSSTSSSILLHWKSGHNGGAS 1429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,078
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)