Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0419.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    29   0.77 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    29   1.0  
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po...    26   5.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   7.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.5  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +1

Query: 253 VLCKLESEQPVPFHCHIQEMRPD-GGP--CLVFIEELGEKRLVNYEQLEPL 396
           V C++   +P PFH  +++++     P  CL++I +  E +L++   L+PL
Sbjct: 501 VKCQMGLSRPGPFHSALRDLKNSIKSPFLCLIYISKDMEYKLLHGNALDPL 551


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 262 KLESEQPVPFHCHIQEMRPDGGPCLVFIEELGEKRLVNYEQLEPLPLEQVRPWAPPYRYC 441
           KLE E        IQ+   DG   LV I+  G + +      + L     +   P Y Y 
Sbjct: 127 KLEKEYKTLAENKIQQRLSDGTKQLVTID--GLQYITGVSDTKWLEFVSAKGQCPKYLYW 184

Query: 442 RANSQLMNISQMLQQIGN 495
              S L+   + L+++GN
Sbjct: 185 NNKSYLLKKKRFLKEVGN 202


>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 74  INSAKDLFDNGITPFPYKVAKALDPDI 154
           INS +++  N   PFP + A+A D DI
Sbjct: 72  INSLREMTTNIPPPFPDEFARAADADI 98


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 468 KPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKS 572
           K NV  +R HE K+G     +SK    S  +G  S
Sbjct: 394 KTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSS 428


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 127  FVRKGCYSIIKEIFSTIYVQTV*ANILQLYETSIKNKY 14
            F+R  C  II      I    V  NI +  +TSI++KY
Sbjct: 3442 FLRNKCEPIISSFGFPISKSAVRTNIERCVQTSIESKY 3479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,147
Number of Sequences: 5004
Number of extensions: 74927
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)