Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0419.Seq
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32071| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 31 1.4
SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_23904| Best HMM Match : RdRP (HMM E-Value=0) 30 1.9
SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24) 29 3.3
SB_41745| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21) 29 5.8
SB_56836| Best HMM Match : GAF (HMM E-Value=2.8e-07) 29 5.8
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 28 7.6
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24) 28 7.6
>SB_32071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 31.5 bits (68), Expect = 0.82
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 465 HKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSP-KTWTVTE 596
+KP++ Q K + ++ V SP+ GS SP KTW+V E
Sbjct: 2 YKPDILKRAQDSQATSTVKRVRLEEPVSSPNVGSTSPAKTWSVDE 46
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 38 IQLENVCLNCLNINSAKDLFDNGITPFPYKVAKALDPDIYRNIEFDVWSEMRRELRYGPR 217
+ L + + LN + K LF N + K +A+ +R + F WS++ +
Sbjct: 606 VDLHEISVAALNGSFRKVLFSNNV-----KSPRAIVLHPHRGLMF--WSDLGYPAKLESS 658
Query: 218 YSDGTTLQVGVK-SYVNWNPNSLFPSTVT 301
Y DGT QV VK + W PN L T T
Sbjct: 659 YMDGTNRQVLVKGGGLTW-PNGLAIDTET 686
>SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 343 IEELGEKRLVNYEQLEPLPLE----QVRPWAPPYRYCRANSQLMNISQMLQQIGNMKRKM 510
I EL EK L + + L L L +V P PP ++C+ N+ +M ++M + + K
Sbjct: 28 IAELPEKLLSSLKNLTSLTLSRNKFEVFPAGPPKQFCQVNTFIMEHNRMQKIPFGVFNKA 87
Query: 511 ASVSQGSLKMMSKAL 555
+ +L+ M A+
Sbjct: 88 KYLGSNALRKMQDAV 102
>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
Length = 1511
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 471 PNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVTEETDI 608
P+V +NR+ + K I KP + K K +K +KS VT D+
Sbjct: 1247 PHVESNRERKRKKPIRKPEEDKKVKKLSEKPTKSSFFTQVTPGADV 1292
>SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)
Length = 683
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 77 NSAKDLFDNGITPFPYKVAKALDPDIYRNIEFDVWSEMRRELRYGPRY 220
N DLF + + + + YRN+ F VW R + Y P+Y
Sbjct: 146 NKNLDLFIEDEAELYSDIFRGVTLESYRNLVFKVWDAFRWSIIYQPKY 193
>SB_41745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 346 EELGEKRLVNYEQLEPLPLEQVRPWAPPYRYCRANSQLMNISQML-QQIGNMKRKMASVS 522
+E G KR++ YE+ +E +R W P+ S+ +++ +L ++G + +AS
Sbjct: 523 KEHGAKRMMKYEEDVRNTMEVIRHWRNPFEPSDELSRQIDLRNLLTHELGPVPWSLASF- 581
Query: 523 QGSLKMMSKA 552
GSL K+
Sbjct: 582 DGSLAKTYKS 591
>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
Length = 791
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 343 IEELGEKRLVNYEQLEPLPLE----QVRPWAPPYRYCRANSQLMNISQM 477
I EL EK L + + L L L +V P PP ++C+ N+ +M ++M
Sbjct: 297 IAELPEKLLSSLKNLTSLTLSRNKFEVFPAGPPKQFCQVNTFIMEHNRM 345
>SB_56836| Best HMM Match : GAF (HMM E-Value=2.8e-07)
Length = 552
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +2
Query: 50 NVCLNCLNINSAKDLFDNGITPFPYKVAKALDPDIYRNIEFDVWSEMRRELRYGPRYSDG 229
+V + LN++SAK+ D+ + LDP ++++ + L + ++G
Sbjct: 261 DVHIGSLNVSSAKEAIDHQ-REIRVPLGVGLDPRFNQDVDKQTGYHTKSLLCKPVKNNEG 319
Query: 230 TTLQVGVKSYVNWNPNSLFPSTVTSKK 310
VGV +N NP + P T +K
Sbjct: 320 EVRVVGVAQIINKNPGGV-PFTKEDEK 345
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 792 PVRKPGCGSSEAEPPRSRPAVHX*PDMPCTSTXKSLKLTG 673
P R+PG + PP S A + ++P TST S+ G
Sbjct: 482 PTRRPGVLYRDRTPPSSANATNMVEEVPLTSTRPSMPPRG 521
>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
Length = 1142
Score = 28.3 bits (60), Expect = 7.6
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +2
Query: 122 YKVAKALDPDIYRNIEFDVWSEMRRE 199
+++ ++LD +++RN+ +VW E + E
Sbjct: 266 WELKRSLDVELFRNVALEVWEEDKNE 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,011,542
Number of Sequences: 59808
Number of extensions: 571175
Number of successful extensions: 1276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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