Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0419.Seq
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 31 0.72
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 31 0.72
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 31 0.72
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 31 0.72
U41556-4|AAY44020.2| 260|Caenorhabditis elegans Hypothetical pr... 29 5.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 6.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 6.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 6.7
AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter o... 28 6.7
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 8.9
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 8.9
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 462 EHKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVTE 596
E KP ++ + +KS+++VKSP K KSP+ V E
Sbjct: 1571 EEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEE 1615
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 501 TKNGIGKPRKSKDDVKSPDKGSKSPKT 581
TK +K+ D+VKSP K KSP+T
Sbjct: 1670 TKKESSPTKKTDDEVKSPTKKEKSPQT 1696
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 462 EHKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVTE 596
E KP ++ + +KS+++VKSP K KSP+ V E
Sbjct: 1571 EEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEE 1615
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 501 TKNGIGKPRKSKDDVKSPDKGSKSPKT 581
TK +K+ D+VKSP K KSP+T
Sbjct: 1670 TKKESSPTKKTDDEVKSPTKKEKSPQT 1696
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 462 EHKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVTE 596
E KP ++ + +KS+++VKSP K KSP+ V E
Sbjct: 1571 EEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEE 1615
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 501 TKNGIGKPRKSKDDVKSPDKGSKSPKT 581
TK +K+ D+VKSP K KSP+T
Sbjct: 1670 TKKESSPTKKTDDEVKSPTKKEKSPQT 1696
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 462 EHKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVTE 596
E KP ++ + +KS+++VKSP K KSP+ V E
Sbjct: 1571 EEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEE 1615
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 501 TKNGIGKPRKSKDDVKSPDKGSKSPKT 581
TK +K+ D+VKSP K KSP+T
Sbjct: 1670 TKKESSPTKKTDDEVKSPTKKEKSPQT 1696
>U41556-4|AAY44020.2| 260|Caenorhabditis elegans Hypothetical
protein C25B8.8 protein.
Length = 260
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 206 NVTLFSSRSKHQTQYSYRYQDLM 138
N+ +FS K+Q Q RYQDLM
Sbjct: 94 NILIFSGFGKYQVQKDGRYQDLM 116
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 41 QLENVCLNCLNINSAKDLFDNGITPFPYKVAK 136
+LEN CL I +DLFD + PF K K
Sbjct: 1106 KLEN-CLKVYKIQGERDLFDEKMRPFHEKAVK 1136
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 41 QLENVCLNCLNINSAKDLFDNGITPFPYKVAK 136
+LEN CL I +DLFD + PF K K
Sbjct: 1106 KLEN-CLKVYKIQGERDLFDEKMRPFHEKAVK 1136
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 41 QLENVCLNCLNINSAKDLFDNGITPFPYKVAK 136
+LEN CL I +DLFD + PF K K
Sbjct: 689 KLEN-CLKVYKIQGERDLFDEKMRPFHEKAVK 719
>AF025464-3|AAB71016.3| 949|Caenorhabditis elegans Transporter of
sr proteins protein1 protein.
Length = 949
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 444 GQLSIDEHKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTW 584
G+++ D AA+ + G G +K++ +P +GSK+ + W
Sbjct: 588 GKMATDATDATFAASSTNNNTAGAGAAGANKENEGAPPRGSKANEAW 634
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 38 IQLENVCLNCLNINSAKDLFDNGITPFPYKVAKALDPDIY 157
I N C+NC N+ ++ + G+T + + K L D +
Sbjct: 743 IDPNNPCMNCTNLVVSQSIHPEGVTYLDHTLDKCLSVDAH 782
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 38 IQLENVCLNCLNINSAKDLFDNGITPFPYKVAKALDPDIY 157
I N C+NC N+ ++ + G+T + + K L D +
Sbjct: 743 IDPNNPCMNCTNLVVSQSIHPEGVTYLDHTLDKCLSVDAH 782
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 38 IQLENVCLNCLNINSAKDLFDNGITPFPYKVAKALDPDIY 157
I N C+NC N+ ++ + G+T + + K L D +
Sbjct: 743 IDPNNPCMNCTNLVVSQSIHPEGVTYLDHTLDKCLSVDAH 782
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 38 IQLENVCLNCLNINSAKDLFDNGITPFPYKVAKALDPDIY 157
I N C+NC N+ ++ + G+T + + K L D +
Sbjct: 743 IDPNNPCMNCTNLVVSQSIHPEGVTYLDHTLDKCLSVDAH 782
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,226,729
Number of Sequences: 27780
Number of extensions: 424096
Number of successful extensions: 1067
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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