Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0419.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45830.1 68416.m04960 expressed protein                             32   0.51 
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    31   0.67 
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    30   1.5  
At4g29950.2 68417.m04261 microtubule-associated protein identica...    29   3.6  
At4g29950.1 68417.m04260 microtubule-associated protein identica...    29   3.6  
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    28   6.2  
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    28   8.3  
At3g12700.1 68416.m01587 aspartyl protease family protein contai...    28   8.3  

>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 453 SIDEHKPNVAANRQHET-KNGIGKPRKSKDDVKSPDKGSKSPKTWTVTE 596
           S+D  K     N +HET +NG   P +++D+ KSP +G+ +  + T+ E
Sbjct: 840 SLDVSKSVAVENAEHETGENGASVPEEAEDN-KSPQQGNGNLPSLTIQE 887


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 456 IDEHKPNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVT 593
           +D   P     ++ E KN   + +K  ++ K PD   K PK   VT
Sbjct: 88  VDLVSPQPKKEKEKENKNKNDEDKKKSEEKKKPDNNDKKPKETPVT 133


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 471 PNVAANRQHETKNGIGKPRKSKDDVKSPDKGSKSPKTWTVTE 596
           P +A++     K G G+P K+K DV  P   +    TW  +E
Sbjct: 175 PVLASSTPQTIKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSE 216


>At4g29950.2 68417.m04261 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 703

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +1

Query: 379 EQLEPLPLEQVRPWAPPYRYCRANSQLMNISQMLQQIGNMKRKMASVSQGSLKMMSKALI 558
           E+  P P+++ +PW    R  RA S+  + ++     G  + K++SV++  L+  ++ L+
Sbjct: 370 EKKSPSPIQKKKPWFRVKRLFRAESEPTHSAK--SPNGKSEVKISSVARNLLEDFNRQLV 427

Query: 559 KVP 567
             P
Sbjct: 428 SEP 430


>At4g29950.1 68417.m04260 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 828

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +1

Query: 379 EQLEPLPLEQVRPWAPPYRYCRANSQLMNISQMLQQIGNMKRKMASVSQGSLKMMSKALI 558
           E+  P P+++ +PW    R  RA S+  + ++     G  + K++SV++  L+  ++ L+
Sbjct: 495 EKKSPSPIQKKKPWFRVKRLFRAESEPTHSAK--SPNGKSEVKISSVARNLLEDFNRQLV 552

Query: 559 KVP 567
             P
Sbjct: 553 SEP 555


>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 554 RAFDIIFRLPWLTDAIFRFMLPICCNIWLMFI 459
           R +D IFRLPW  + +      +C N +L  +
Sbjct: 249 RIYDTIFRLPWRCEVLIDTGFFVCVNSFLSLL 280


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 459  DEHK-PNVAANRQHETKNGIGKPRKSKDDV 545
            DE K P  +  R+ ETK G G+P+K K ++
Sbjct: 1451 DESKVPEGSKKRKLETKRGRGRPKKVKQEI 1480


>At3g12700.1 68416.m01587 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease; similar to
           CND41, chloroplast nucleoid DNA binding protein
           (GI:2541876) [Nicotiana tabacum]
          Length = 461

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 319 DGGPCLVFIEELGEKRLVNYEQLEPLPLEQVRPWAPPYRYCRANSQLMNISQMLQQIGNM 498
           D G  L  + +   K++V       + L++V+P   P  YC + +   N+S++ Q   ++
Sbjct: 338 DSGTSLTLLADAAYKQVVTGLARYLVELKRVKPEGVPIEYCFSFTSGFNVSKLPQLTFHL 397

Query: 499 K 501
           K
Sbjct: 398 K 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,236
Number of Sequences: 28952
Number of extensions: 404005
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)