Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0417.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   0.77 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   2.4  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   4.1  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    27   4.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.4  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   7.2  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -2

Query: 439 YVRYMSMALFWST**SISGAVDMTQLM*LSSFSTLRRYRCVASGSMTLTSLGHPPSAWFA 260
           ++  +S AL  S   ++  AV  T L+  ++  T+  Y  VA G + L+    P S W  
Sbjct: 398 FIFLISAALLCS---NLPSAVAFTSLLSAAAVPTIMAYAAVAFGRLFLSRNDFPKSEWSL 454

Query: 259 PESCSPF 239
            +   PF
Sbjct: 455 GKLSKPF 461


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 261  LLRAVVRSDGISVVFRIERSVLRGLVXGVPQDEVLVLDDIRGDL 130
            ++   V  DGI +   ++  VLR  +  +PQD VL+   +R +L
Sbjct: 1233 IMSGAVEVDGIDIN-SLDLEVLRQRISLIPQDPVLISGTVRSNL 1275


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 322 SGTDVKLKKMTTTSTASCPLLRRWIITCSKTTP-STCTER 438
           S +   LKK    S  SC + RR  + C +  P S C ER
Sbjct: 2   SSSPPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRCKER 41


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 91  SASVLRAGPGDVRQIATNVVEHKNF-ILRNPXHQPTQHTPFYSENNANTIRTDYSSQERT 267
           SAS++   P  + +  +N   H +    R+P + P+Q  P  +EN ++T  ++   + RT
Sbjct: 311 SASMMSRTPNTLNR-PSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRT 369

Query: 268 T 270
           +
Sbjct: 370 S 370


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 508 R*WNGSDANRSAPYAGSLMAGNAFAVTYI 594
           R W G  A R+AP + +L  GNAFA  YI
Sbjct: 173 RGW-GWTAARNAPGSFALFGGNAFAKEYI 200


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 620  RVAVESPTSM*VTAKALPAIRLPAYGADRFASLPF 516
            R++ + P  + + AK+   I LPA  A+R +  PF
Sbjct: 2008 RLSFDDPVDLVIPAKSFLDITLPAKDANRASHYPF 2042


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 261 LLRAVVRSDGISVVFRIERSVLRGLVXGVPQDEV 160
           LL  ++RSD  + V+R+  ++L  L+   P+D +
Sbjct: 252 LLVQIIRSDTKTKVYRLVLAILVNLIDKAPKDTI 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,254
Number of Sequences: 5004
Number of extensions: 61949
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)