Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0417.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    31   1.4  
01_01_0834 + 6522709-6523452                                           29   3.2  
08_01_0225 - 1819193-1819725,1821031-1821319,1821456-1821488           28   7.5  
03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075...    28   7.5  
08_02_0529 + 18236782-18236807,18237166-18237229,18237334-182373...    28   9.9  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   9.9  

>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 400 TCS-KTTPSTCTERTMQKCHLCQNW 471
           +CS  TTP+    +T+Q  H C+NW
Sbjct: 527 SCSYSTTPAMAVPKTLQNVHSCENW 551


>01_01_0834 + 6522709-6523452
          Length = 247

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 279 HLPRGSLLRAVVRSDGISVVFRIERSVLRGLVXGVPQDEVLVLDDIR 139
           H P G+LL A        V     R+V R LV  +  +EVLVLD +R
Sbjct: 92  HAPSGTLLAAA--HGPAPVPAHRARAVARSLVSALQPEEVLVLDAVR 136


>08_01_0225 - 1819193-1819725,1821031-1821319,1821456-1821488
          Length = 284

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 334 VKLKKMTTTSTASCPLLRRWIITCSKTTPSTCTERTMQKCHLCQ--NWNASAVAL*T 498
           + L  +T + +   PLL+RW++      P+  +E+ + K   C+   W   + AL T
Sbjct: 189 LSLPVVTISESIRFPLLQRWVLGTFSAPPTAKSEKKVPKKFSCEFNEWGKYSRALFT 245


>03_06_0133 -
           31906305-31906582,31906820-31907105,31907442-31907566,
           31907645-31907759,31907852-31908485,31911425-31911555,
           31912308-31912397,31912440-31912486,31913707-31913761,
           31914576-31914908,31915278-31915337,31915427-31915618,
           31916149-31916220,31916307-31916435
          Length = 848

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 76  MPFRWSASVLRAGPGDVRQIAT 141
           M +RW A VLR  PG V +I T
Sbjct: 638 MLYRWRAEVLRTSPGSVIEIDT 659


>08_02_0529 +
           18236782-18236807,18237166-18237229,18237334-18237383,
           18237588-18237781,18238323-18238386,18238459-18238531,
           18238882-18239005,18239491-18239578,18239649-18239714,
           18239818-18239889,18239999-18240111,18240580-18240620,
           18241782-18241913
          Length = 368

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 276 LPRGSLLRAVVRSDGISVVFRIERSVLRG 190
           LP GS+L+ +    GI V F + RSV RG
Sbjct: 109 LPTGSMLKKLEEEKGIVVRFIVGRSVNRG 137


>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
            4498179-4499263,4499351-4500296
          Length = 1264

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 217  ENNAN-TIRTDYSSQERTTRKVGGLKMSAS-SIPKPHSGTDVKLKKMTTTST 366
            E + N TIR      +R  RKVGG  ++A   +   HSG       ++ +ST
Sbjct: 1009 ETSGNLTIRVARDKGKRRKRKVGGAGLAAKFEVSSSHSGNSTPSSPLSPSST 1060


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,274,676
Number of Sequences: 37544
Number of extensions: 452898
Number of successful extensions: 1341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)