Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0417.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34027| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   3e-23
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               29   5.8  
SB_33058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_34027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/106 (44%), Positives = 66/106 (62%)
 Frame = +3

Query: 258 GANHAEGGWPKDVSVIDPEATQRYRRKVEKDDNYINCVMSTAPEMDHYVLQNNAIDMYRT 437
           G NH EGGWPKDV+  + E T RYR+KVEKD+ Y+N +      M+H + QNNAID+Y  
Sbjct: 56  GINHVEGGWPKDVNPAEVEQTIRYRKKVEKDEIYMNTIQQLGNVMEHCIKQNNAIDIYED 115

Query: 438 YYAEMPSMPELERISCRTVNVYREVMERKRREPVSSICWQPDGGQR 575
           Y+ ++      E  S +T+NV+R+  E   +   +SI W PDG Q+
Sbjct: 116 YFPDLEEDQSCETPSAKTINVFRD--ENNIKRTATSISWYPDGTQK 159


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 353  QLHQLRHVHCSGDGSLRAPKQRHRHVPNVLCRNAIYARTGTHQLSH 490
            Q +Q   V   G   L    Q H H  ++  RN I  R+GT  + +
Sbjct: 1483 QFYQFEEVQIYGGAHLAVLTQPHNHSASIFFRNMIGDRSGTVHIGY 1528


>SB_33058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 489 TVNVYREVMERKRREPVSSICW 554
           TV VYR++++ + REP +S+ W
Sbjct: 84  TVAVYRDLLDVRHREPDASLIW 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,165,882
Number of Sequences: 59808
Number of extensions: 510667
Number of successful extensions: 4958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4951
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)