Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0417.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19010.2 68414.m02366 expressed protein                             29   2.7  
At1g19010.1 68414.m02365 expressed protein                             29   2.7  
At3g02330.1 68416.m00216 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At5g40750.1 68418.m04945 hypothetical protein                          28   8.3  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    28   8.3  
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    28   8.3  

>At1g19010.2 68414.m02366 expressed protein
          Length = 290

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 258 GANHAEGGWPKDVSVIDPEATQRYRRKV-EKDDNYINCVMSTAPEMD 395
           G+N  EGG        D + ++  R K  EKD+ Y++   ST P  D
Sbjct: 215 GSNSPEGGGSSSQDDDDDDESRSRRHKTGEKDNAYLDSFTSTEPSRD 261


>At1g19010.1 68414.m02365 expressed protein
          Length = 319

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 258 GANHAEGGWPKDVSVIDPEATQRYRRKV-EKDDNYINCVMSTAPEMD 395
           G+N  EGG        D + ++  R K  EKD+ Y++   ST P  D
Sbjct: 244 GSNSPEGGGSSSQDDDDDDESRSRRHKTGEKDNAYLDSFTSTEPSRD 290


>At3g02330.1 68416.m00216 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 861

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 356 LHQLRHVHCSGDGSLRAPKQRHRHV 430
           LH  R V C+  G+L   KQ H H+
Sbjct: 8   LHMTRSVECAKQGALELGKQAHAHM 32


>At5g40750.1 68418.m04945 hypothetical protein 
          Length = 297

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 339 VEKDDNYINCVMSTAPEMDH-YVLQNNAIDMYRTYYAEMPSMPEL 470
           V KDD+Y+  ++S+ P +++ YVLQ+   D    +  ++PS+  L
Sbjct: 73  VYKDDDYVVRLLSSCPILEYLYVLQHEQ-DNVTKFSVKVPSLETL 116


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 276 GGWPKDVSVIDPEATQ--RYRRKVEKD-DNYINCVMSTAPEMDHYVLQNNAID 425
           G  PK VS  +PEA      R+ + K   NY+   +S+ P+   ++ +NNA++
Sbjct: 24  GRKPKPVSSSEPEANADGSDRKTIGKPLPNYLKPTISSRPDPVKFLRKNNAVE 76


>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +3

Query: 531 EPVSSICWQPDG 566
           +PV+S+CW+PDG
Sbjct: 65  KPVTSLCWRPDG 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,856
Number of Sequences: 28952
Number of extensions: 342240
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)