Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0413.Seq
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    83   6e-18
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   3.1  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    24   5.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    24   5.5  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    23   9.6  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    23   9.6  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 83.4 bits (197), Expect = 6e-18
 Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAIRRMGESDDC 179
           DLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +R  GESDDC
Sbjct: 10  DLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDC 68

Query: 180 IVRLTKKDGIL 212
           I RLT +DG+L
Sbjct: 69  INRLTTQDGLL 79


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 152 DSPT--DNIHFRCVSSTTCGGVYVSN 81
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 220 FLASIPSFFVNLTMQSSDSPILRIAPQTTYILDVSAARP 104
           F  S+P   V L     D+P + + P ++YI   SA  P
Sbjct: 288 FPLSLPGQSVELAW---DAPGMAVGPNSSYITSTSAGTP 323


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 76  SCTEAWSLAWMRRLLAEHFLGQYKS 2
           S T+A SL W  +   +H + Q+KS
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKS 673


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 211 SIPSFFVNLTMQSSDSPILR 152
           S+P F VN+T  S D+ + R
Sbjct: 249 SLPGFNVNITTNSKDTRLAR 268


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 236 NEMLIVFSQYTIFLC 192
           NE ++V+SQ++ +LC
Sbjct: 741 NEKILVYSQFSQYLC 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,690
Number of Sequences: 5004
Number of extensions: 15655
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)