Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0413.Seq
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              26   4.9  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   6.5  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)               25   8.6  
SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)                  25   8.6  
SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)                      25   8.6  

>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 205 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 77
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 39  RLIHAKDHASVQLVIADVDPATGR 110
           R+ H  +HA  Q++ A +DP TG+
Sbjct: 44  RVHHGINHAKSQILTAKLDPLTGK 67


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 187 LTMQSSDSPILRIAPQTTYILDVSAA 110
           +T +++ +P   +AP+TT +L+ SAA
Sbjct: 7   VTAETTAAPETTVAPETTAVLETSAA 32


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  LVIADVDPATGRAADTSKMYVVCGAI 152
           L++AD+ P T        +Y++C  I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 42  LIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 221
           ++   +H   Q++ A +DP TG      K+ +V   I  +      +  L  KDG  A+N
Sbjct: 520 IVETINHVKSQILTAKLDPLTG------KIVLVSTGIVFLNAELCALFGLEAKDGDFAEN 573

Query: 222 Y*HL 233
             HL
Sbjct: 574 RGHL 577


>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
          Length = 233

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 200 FLC*PHDAIIRLSHPSDSPTD 138
           FLC  H AI   +HPS  P D
Sbjct: 69  FLCHTHAAITGKAHPSGRPPD 89


>SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)
          Length = 560

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 57  DHASVQLVIADVDPATGRAADTSKMYVVCGA 149
           +HA  Q++ A +DP TG+    SK  V   A
Sbjct: 341 NHAKSQILTAKLDPLTGKIVLVSKGIVFLNA 371


>SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 302

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 24  CSASNRLIHAKD--HASVQLVIADVDPATG 107
           C A +  +H  D  HA  Q++ A +DP TG
Sbjct: 38  CRAPHGRVHRGDDHHAKSQILTAKLDPLTG 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,868,195
Number of Sequences: 59808
Number of extensions: 122690
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)