Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0413.Seq
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    98   1e-21
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   4.4  
U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical p...    25   7.6  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAIRRMGESDDC 179
           +LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAIRRMGESDD 
Sbjct: 10  ELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDA 69

Query: 180 IVRLTKKDGILAKN 221
           I+RL +KDG++ ++
Sbjct: 70  ILRLAQKDGLVPRD 83


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 90  VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 206
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 61  WSLAWMRRLLAEHFLGQYKS 2
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 173  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 78
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 173  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 78
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical
          protein K09H11.11 protein.
          Length = 121

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 29 GQQPPHPR*GPCF 67
          GQQPPHP+  P F
Sbjct: 19 GQQPPHPQIDPLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,713,744
Number of Sequences: 27780
Number of extensions: 93252
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)