Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0413.Seq
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    67   2e-12
At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    66   4e-12
At3g04890.1 68416.m00531 expressed protein                             28   1.3  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    26   4.1  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    26   5.4  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    26   5.4  
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    25   7.1  
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    25   7.1  
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi...    25   7.1  
At5g58220.1 68418.m07289 expressed protein                             25   9.4  
At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2 ...    25   9.4  
At3g45830.1 68416.m04960 expressed protein                             25   9.4  

>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 34/72 (47%), Positives = 46/72 (63%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCI 182
           +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R  G++D  +
Sbjct: 10  ELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVRAQGDADSGV 68

Query: 183 VRLTKKDGILAK 218
            RL +K  + AK
Sbjct: 69  DRLWQKKKVEAK 80


>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 33/72 (45%), Positives = 46/72 (63%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCI 182
           +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R  G++D  +
Sbjct: 10  ELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVRAQGDADSGV 68

Query: 183 VRLTKKDGILAK 218
            RL +K  + AK
Sbjct: 69  DRLWQKKKVEAK 80


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  ASNRLIHAKDHASVQLVIADVDPATG-RAADTSKMYVVCGAIRRMGESDDCI 182
           +S  +   KD +  ++   DVD   G   +D    Y V G +     SDDCI
Sbjct: 57  SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 142 QTTYILDVSAARPVAGSTSAITSCTE 65
           Q T IL+ +  +P+  STSAIT  TE
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 100 AGSTSAITSCTEAWSLAW 47
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 100 AGSTSAITSCTEAWSLAW 47
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 48  HAKDHASVQLVIADVDPATGRAADTS 125
           HAK+ A+V  ++A +DP TG+    S
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKS 612


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 81  IADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVR 188
           I  + PA GRA    +   V G   RMG S+D +V+
Sbjct: 208 IVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK 243


>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
           finger family protein contains Pfam profiles: PF01448
           ELM2 domain, PF00628 PHD-finger
          Length = 631

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 141 CGAIRRMGE-SDDCIVRLTKK 200
           CG  RR G  SDDC+V   KK
Sbjct: 181 CGETRRRGNRSDDCLVYSRKK 201


>At5g58220.1 68418.m07289 expressed protein
          Length = 324

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 145 PQTTYILDVSAARPVAG 95
           P TT++LDVS   P AG
Sbjct: 205 PITTHVLDVSRGAPAAG 221


>At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2
          subunit, putative similar to Swiss-Prot:Q9QZH4
          5'-AMP-activated protein kinase, beta-2 subunit (AMPK
          beta-2 chain) [Rattus norvegicus]
          Length = 259

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +2

Query: 8  VLPEEMLGQQPPH-PR 52
          V P E++GQ PPH PR
Sbjct: 10 VAPPELMGQSPPHSPR 25


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/54 (16%), Positives = 32/54 (59%)
 Frame = +3

Query: 42  LIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKD 203
           L++A+D  S +  +++ D  +G     ++++V C A+ +  ++ + ++ + +++
Sbjct: 693 LVNARDRLSRKYQVSEDDGNSGDENLEARLFVSCNALSKKRKTRESLMDMERRE 746


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,364,426
Number of Sequences: 28952
Number of extensions: 86163
Number of successful extensions: 222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)