Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0412.Seq
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 389 DHPWFLSPVFRTRSRGSRYESSDAR 463
           +HPWF   V R +     Y   DAR
Sbjct: 128 EHPWFKKSVQRIKPYDEYYVWRDAR 152


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 330 EQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAA 455
           +++ IL +I    G+L     I G C L+   E++ VGM  A
Sbjct: 281 DRIDILSQINGILGSLVA---ITGGCFLFRAWESIIVGMIGA 319


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 733 LAAPSPYRANVTPPSPRYLW 674
           LA  +  R+NVTP SP   W
Sbjct: 901 LAVDTVARSNVTPRSPGRAW 920


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 315 ALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQ 425
           AL    + T+L   ET +  +Y EK+     H +  Q
Sbjct: 463 ALSRRIKATVLFATETGTSQMYAEKLSELLGHAFHSQ 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,955
Number of Sequences: 438
Number of extensions: 5578
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)