Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0411.Seq
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.3  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   7.1  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   7.1  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   7.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   7.1  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   9.4  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 389 SGVIVYFFRERAVYSSRISKQFYFQIARSKGPYHSGGVP 273
           + +I+  +RE  +  ++I +  Y Q+   K  YH+   P
Sbjct: 639 NAIIISMYREHLISRTQIQELLYHQVPSEKAGYHTLRAP 677


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 300 LRPCDLE-VKLLRDSRTVYSALAKEVDDYAGW 392
           L P  +E ++LLRD +T +     +VD   GW
Sbjct: 586 LEPQTIESIRLLRDQKTPFVVALNKVDRLYGW 617


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 566 QRKTVLSIRRWACSALVNVAKNNGAKVYGDCPV-VDVHY 679
           QR+    +RRWA  A VN+A  +   +    PV +DVH+
Sbjct: 430 QRRGYAGVRRWAKKARVNIADMDAVFI----PVHLDVHW 464


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 354 CIQFSNLEAILLPNRTVEGTIPFRRCAMSFR 262
           C+Q    EA L   RTV  T+ F R  M ++
Sbjct: 27  CLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQ 57


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 437 TRVFTSSYLGYQHWKSP 487
           TRVFT SY+G  ++ SP
Sbjct: 179 TRVFTQSYVGTPYYMSP 195


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 568 LRKEPILNADGSNSGKIYCAHEAPTLHWGFPVLIPK 461
           L KEPIL     N    YCAH+  + H  F  + P+
Sbjct: 336 LEKEPILQK--LNELITYCAHDTYSTHQVFKKVFPQ 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,672
Number of Sequences: 5004
Number of extensions: 70556
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)