Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0411.Seq
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                 31   1.1  
SB_32181| Best HMM Match : CUB (HMM E-Value=0)                         29   3.3  
SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)                 29   4.3  
SB_46214| Best HMM Match : A_amylase_inhib (HMM E-Value=2.1)           29   4.3  
SB_7589| Best HMM Match : Ras (HMM E-Value=0)                          29   4.3  

>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 37/94 (39%), Positives = 56/94 (59%)
 Frame = +3

Query: 255 LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMHLSRCTVR 434
           LTSGTTWH+AG++W LRP D EV+++  +R +  +L +E     GWI NGG+ ++    R
Sbjct: 143 LTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGWIENGGLFIANNKER 202

Query: 435 TQEYLRLHTLGISTGNPQCSVGAS*AQ*IFPLLD 536
             EY RL TLG   G     +     + ++PL++
Sbjct: 203 LDEYKRLMTLGHCYGIDSHVLDPKATKELYPLMN 236



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = +2

Query: 596 WACSALVNVAKNNGAKVYGDCPVVDVHYSHNLLGNKEVTGVNPDRGFI*TKSRGELGRCF 775
           WA SAL   A   GAKV+ +CPV  +    +  G   V+G++   G I TK+    G C+
Sbjct: 257 WA-SALTRGATKRGAKVFENCPVTGITTEVDDFGVLRVSGIDTVAGHIKTKNVVNCGGCW 315


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 561 LRNGRRYYRSGDGLAVRLSMLLRTTVQRFTETVRLLTFI 677
           L +G+R +R GDG+   +  LLRT ++R T+ +R L  +
Sbjct: 70  LGSGQRGFRKGDGICQNI-WLLRTLIRRSTDLLRPLKLV 107


>SB_32181| Best HMM Match : CUB (HMM E-Value=0)
          Length = 588

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 763 KFTTGFGLNETPVRVYPGNLLISEQVV 683
           +F  GFG+N TP   Y G L+  EQVV
Sbjct: 337 EFLDGFGVNATPRGKYCGYLVTREQVV 363


>SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)
          Length = 311

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 561 LRNGRRYYRSGDGLAVRLSMLLRTTVQRFTETVRLLTFI 677
           L +G+R +R GDG+   +  LL T ++R T+ +R L  +
Sbjct: 27  LGSGQRGFRKGDGICQNI-WLLHTLIRRSTDLLRPLKLV 64


>SB_46214| Best HMM Match : A_amylase_inhib (HMM E-Value=2.1)
          Length = 344

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 561 LRNGRRYYRSGDGLAVRLSMLLRTTVQRFTETVRLLTFI 677
           L +G+R +R GDG+   +  LL T ++R T+ +R L  +
Sbjct: 297 LGSGQRGFRKGDGICQNI-WLLHTLIRRSTDLLRPLKLV 334


>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
          Length = 640

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 28  VPKKMFKVIRDGSVRVRASNFLKRSNTIRFSSGAGS 135
           VP++MFK++  G   V  S+F+ R    RF S   S
Sbjct: 438 VPERMFKIVLAGDAAVGKSSFILRLCRNRFHSALNS 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,584,844
Number of Sequences: 59808
Number of extensions: 540556
Number of successful extensions: 1147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)