Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0411.Seq
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.46 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           25   1.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           25   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 523 FHCWTHQRSKWALYATEDGTI--DPA 594
           +  W HQ   +A Y   DGTI  DPA
Sbjct: 183 YRVWNHQLISYAGYKNPDGTIIGDPA 208


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 777 PKHLPSSPRDLV*MKPRSGF 718
           P+H P  P+DLV ++P   F
Sbjct: 67  PEHKPPGPKDLVYLEPSPPF 86


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 777 PKHLPSSPRDLV*MKPRSGF 718
           P+H P  P+DLV ++P   F
Sbjct: 68  PEHKPPGPKDLVYLEPSPPF 87


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 522 FPLLDPSAFKMGSLRNGRRYYRSGDGLAVRLSMLLRTTVQRFTETVRLL 668
           F + D S  + G+ +NG+ + RS     V    L   T+Q    T +++
Sbjct: 230 FGMTDNSRLEPGTNKNGKFFSRSSTSRIVISESLKHFTIQSSVTTSKMM 278


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 639 APLFLATLTSALQAHRR 589
           APL  ATL   L  HRR
Sbjct: 524 APLLAATLAGGLCPHRR 540


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 390 WINNGGMHLSRCT-VRTQEYLRLHTLGISTGNPQCSVGAS*AQ*IFPLLDPS 542
           WI  G    SR   + T+  +   +LG+ST    CS+  +  Q   PL   S
Sbjct: 485 WIGAGRDSDSRLLDLCTKFLMHKDSLGLSTATSTCSLAVAKQQNQVPLTSSS 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,098
Number of Sequences: 438
Number of extensions: 5118
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)