Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0411.Seq
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    29   3.6  
At2g32680.1 68415.m03995 disease resistance family protein conta...    29   4.7  
At1g01680.1 68414.m00086 U-box domain-containing protein               29   4.7  
At2g21400.1 68415.m02547 lateral root primordium (LRP) protein-r...    28   8.2  

>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 580 YRLPLRKEPILNADGSNSGKIYCA-HEAPTLHWGF 479
           + LP RK+ +     S    +Y A HE P L WGF
Sbjct: 4   WNLPYRKDDVETGVSSRRPLLYPAMHENPELRWGF 38


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 339 NLEAILLPNRTVEGTIPFRRC-AMSFRLLISSF**NRIHASL-R*LVERVTARYASTDNN 166
           NLE + L N  +EG+IP   C   S R L  S   NR+   L R  V   + ++ S  NN
Sbjct: 529 NLELVYLRNNNLEGSIPDALCDGASLRTLDVSH--NRLTGKLPRSFVNCSSLKFLSVINN 586

Query: 165 NI 160
            I
Sbjct: 587 RI 588


>At1g01680.1 68414.m00086 U-box domain-containing protein
          Length = 308

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +3

Query: 309 CDLEVKLLRDSRTVYSALAKEVDDYAGWINNGGMHLSRCTVRTQEYLRLHTL 464
           C + ++++RD          E +++  W+ +GG    R + +T + L  H L
Sbjct: 239 CPISMEIMRDPHVAADGFTYEAEEFRKWLRSGG----RTSPKTNKPLENHNL 286


>At2g21400.1 68415.m02547 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 174

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 511 RSKSFHCWTHQRSKW 555
           +SK+FHC TH +S W
Sbjct: 30  KSKAFHCQTHIKSTW 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,638,981
Number of Sequences: 28952
Number of extensions: 374027
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)