Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0410.Seq
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    31   0.25 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    29   0.77 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    28   1.8  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    28   1.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   5.4  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   9.4  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.4  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   9.4  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 394 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITS 254
           L R  S +   SSSS    H + P T S +P + ST S  G +VIT+
Sbjct: 48  LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITA 94


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 125 MLPILNPFTVTFTIHTLHFTTKTITNLFNLPKN 27
           +L + NP + +  +H    TT  I NLFN+P N
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVPSN 766


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 299 GRFNVLAHRVQCHHFRDIRWTSVTRHQAHAHPPTMVRFVVG-PKQPPETIS 150
           GR N++ +  + HHFR   +  V     +  PPT  +F V   + P  TIS
Sbjct: 557 GRTNIMLYTERAHHFRRFDFRGVKAVVMYG-PPTNPQFYVELVRMPMRTIS 606


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 329 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSF 445
           +PV +H+ ++TS      VPG  R +D   DCP++    F
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPF 257



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 464 SSENSSQMTLQRLQDSHLNLFDG 396
           S++NSS  + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 511 QPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 365
           QP +  L L+TS T   P++      N+CR++  I  S  + PR+ S  V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 243  TYIPEVMTLNPMCEYVET 296
            TY+P  MTLNPM  Y+ +
Sbjct: 1060 TYMPVPMTLNPMESYINS 1077


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 564 DRISIPILPTSGAATSRTNP 505
           +R+S+P  PT G  TS  NP
Sbjct: 581 NRLSLPAYPTDGGDTSIDNP 600


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 242 WTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 129
           WTS T H   A      R+++  + P E IS ++G TV
Sbjct: 306 WTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 576 LIVKDRISIPILPTS 532
           LIV DR+ +PILPT+
Sbjct: 37  LIVIDRVELPILPTT 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,566,537
Number of Sequences: 5004
Number of extensions: 77585
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)