Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0410.Seq
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,648... 31 1.1
06_02_0109 - 11919279-11920109 30 1.8
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 29 3.2
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 3.2
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 5.6
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 7.4
04_01_0619 - 8125611-8127967,8128449-8130123 28 7.4
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 28 7.4
02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989 28 7.4
12_02_0614 - 21172290-21172480,21174927-21175164 28 9.8
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 28 9.8
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 28 9.8
>11_01_0776 +
6476743-6477539,6478658-6479481,6479803-6480790,
6482633-6483545
Length = 1173
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 749 NLVSTEYLTVD-GVFLTFRFPNTGISVSQSDTDVSVPLHVGRLRLP 615
NL S ++ D G+ ++F F GISV +S T S+P V L LP
Sbjct: 612 NLKSVKFSPGDSGMDISFLFYGIGISVDRSRTASSLPFSVRTLELP 657
>06_02_0109 - 11919279-11920109
Length = 276
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = -3
Query: 338 ALGDSGHRERHSLGRFNVLAHRV-----QCHHFRDIRWTSVTR--HQAHAHPPTMV 192
AL D G + L HR+ Q HH+ + ++ R AHA PPTMV
Sbjct: 69 ALDDISRSPDKKPGELHALDHRISSILQQYHHYNHVASNNIHRDYRDAHAPPPTMV 124
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 692 PNTGISVSQSDTDVSVPLHVG 630
PN+GIS+S ++T + VPL VG
Sbjct: 233 PNSGISLSMAETVMQVPLSVG 253
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 222
VV + +V K + GN TV P + SG GP+ R + W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 176 PKQPPETISASLGPTVWMLPILNPFTVTF 90
PK P T + L P VW L + NP+ +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 52 VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 153
V++ +KC C+ K+ + F GN+ + N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 580 RLRRWPGSGPAWGSRRRPT 636
R RRWPG AW R RPT
Sbjct: 586 RRRRWPGQ--AWSQRMRPT 602
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -1
Query: 598 LAIVVDVLNREGQNLDSHSSDVRRSHFAYQPANWSLSL 485
++ VVD+L R G +LD + VRRS PA WS L
Sbjct: 571 VSCVVDMLARAG-DLDGAAEIVRRSSGGGSPAAWSALL 607
>02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989
Length = 246
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 577 GRLRRWPGSGPAWG 618
G+ RRWPG G WG
Sbjct: 67 GQCRRWPGCGGGWG 80
>12_02_0614 - 21172290-21172480,21174927-21175164
Length = 142
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 577 GRLRRWPGSGPAWG 618
GRLRRW G AWG
Sbjct: 49 GRLRRWRADGRAWG 62
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 371 SCEKFVFVHDLALGDSGHRERHSLGRFNVLAHRVQCHHFRDIRWTSVT 228
S EK +A+ DSGHR R S N + Q + I W VT
Sbjct: 740 SVEKLGRSRSVAISDSGHRSRQSTADSNEPSGDSQPIADQPIEWVKVT 787
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +3
Query: 408 IKMTVLQTLEGHLRAILGTLTVEDVYKDRDQFAGWYAK-WLRRTSEEWESRFCPSRLRTS 584
+ + VL L A + TLT E+ + D+ + ++ W +FC +
Sbjct: 15 LALVVLVALAARSGAEVITLT-EETFSDKITEVDRARRVQIKEKDTVWFVKFCVPWCKHC 73
Query: 585 TTMARIWASLGKSQTANVKRDADVGVALANRDAGIREPECEK 710
+ +W LGK V AD + + D G+ +P C K
Sbjct: 74 KNLGTLWEDLGK-----VMEGAD-EIEIGQVDCGVSKPVCSK 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,646,189
Number of Sequences: 37544
Number of extensions: 582864
Number of successful extensions: 1824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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