Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0409.Seq
         (843 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          23   8.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   8.8  

>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 789 RPTTGYVSTRWYRAPEVL 842
           +P+T  V T+ Y APEVL
Sbjct: 221 QPSTHRVGTKRYMAPEVL 238


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 783 DRTSLASPSRRFSPIPGPQHSKFXGFRIAVKEARVDAYVLAL 658
           +R+   SP RR  PI   QH+   G R   K+ R ++++LAL
Sbjct: 222 NRSQQRSP-RRDPPI-NRQHTPCAGRRWKTKQFRENSFLLAL 261


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,833
Number of Sequences: 2352
Number of extensions: 17310
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)