Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0409.Seq
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    32   0.008
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   1.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   8.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   8.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.1  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 482 IA*KTQPRQIVKLREVIRENDTLYFVFEYMR-GNLYQLIRDADRAFPEPV 628
           +A  T+P  +V+L    +  D LYFV EY+  G+L   I+   + F EPV
Sbjct: 38  LALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGK-FKEPV 86


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 744 VKIADLGSPEKSGRRRPTTGYVSTRWYRAPEVL 842
           VK+ D G  ++    R T  +  T  Y APEV+
Sbjct: 505 VKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVI 537


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 790 RLRPDFSGEP 761
           RLRP+F GEP
Sbjct: 51  RLRPNFGGEP 60


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 747 KIADLGSPEKSGRRRPTTGYVSTRWYRAPEVL 842
           K+ D GS    G       +  T  Y APEV+
Sbjct: 195 KLTDFGSSVLIGAPNEIDKFYGTPGYTAPEVI 226


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 100 HHFQNTFKLIQTTYVK 53
           +H QN FK+I++T  K
Sbjct: 57  NHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 100 HHFQNTFKLIQTTYVK 53
           +H QN FK+I++T  K
Sbjct: 40  NHIQNIFKIIKSTNEK 55


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 771  LASPSRRFSPIPGPQHS 721
            +A P+R+  P+PG  ++
Sbjct: 1646 IAPPNRKLPPVPGSNYN 1662


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -2

Query: 233 DLN*SETLNKHLVAYFQYPLINNVTNLCLRRNYLEIVKDYLSLQAS 96
           D+N  ET+ + L  Y+Q  ++  V    L   ++++ KD + +  +
Sbjct: 508 DMN-YETMGRALRYYYQRGILAKVDGQRLVYQFVDVPKDIIEIDCT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,201
Number of Sequences: 438
Number of extensions: 4659
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)