Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0408.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.7  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   9.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 449 GAPTPSQCISSVRIWRV*TIPRTCRFVDV*TSLVSSPRT 333
           GAP+PS   SS+   R  T   T     V TS  S P T
Sbjct: 73  GAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTT 111


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 386 LESFIRAKYEQKKYIAKEWVP 448
           L  F++    + KY+  EWVP
Sbjct: 77  LLEFVQIDPHRWKYVNGEWVP 97


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 434 KEWVPPQLPKVNWDKEIDEEMD 499
           K + PP+LP V    E + E+D
Sbjct: 136 KPYTPPRLPTVYGKPEQNYEVD 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,541
Number of Sequences: 336
Number of extensions: 3822
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)