Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0408.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    80   3e-16
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    76   4e-15
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    72   9e-14
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    67   3e-12
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    63   4e-11
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    52   8e-08
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.85 
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   1.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.0  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 30/53 (56%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
 Frame = +3

Query: 102 ILVQMLKDEDNKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVR 257
           +L  +L++  NK C DC   + PRWASWNLG+F+CIRC+G+HR+LGVH+S+V+
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVK 67



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = +2

Query: 254 ESVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIA 433
           +SV+LDSWT EQ  ++ + GN RA   +EA L        +D  + +FI+ KYE KK++ 
Sbjct: 67  KSVDLDSWTDEQTENMTRWGNERANLYWEAKLAGG--HVPSDSKIATFIKTKYEFKKWVL 124

Query: 434 KEWVP 448
              +P
Sbjct: 125 YPEIP 129


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 31/47 (65%), Positives = 37/47 (78%)
 Frame = +3

Query: 132 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVRVSISI 272
           N  C DC  +G +WASWNLGIFLC+RCA IHR LG H+SKV+ SIS+
Sbjct: 20  NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVK-SISL 65



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
 Frame = +2

Query: 254 ESVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMS----LESFIRAKYEQK 421
           +S++LD W+ +Q+  ++  GN  A   +  N P S   P N +S    +E +IR KYE+K
Sbjct: 61  KSISLDEWSNDQIEKMKHWGNINANRYWNPN-PLSHPLPTNALSDEHVMEKYIRDKYERK 119

Query: 422 KYI----AKEWVPPQLP 460
            ++    +    PP LP
Sbjct: 120 LFLDENHSTNSKPPSLP 136


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +3

Query: 84  QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVR 257
           ++  Q +L  +    DNK C DC AK P W+S   GI+LC+ C+  HRN+GVHIS VR
Sbjct: 5   KEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVR 62


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 29/51 (56%), Positives = 36/51 (70%)
 Frame = +3

Query: 105 LVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVR 257
           L Q+ +  +NK C DCDA  P+WAS NLGIF+C+ C+G HR LGV  S VR
Sbjct: 5   LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVR 55



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 257 SVNLDSWTPEQVVSLQQMGNSRAR 328
           S+ +D+W+  QV  ++  GNS A+
Sbjct: 56  SITMDNWSERQVKMMEVGGNSNAK 79


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
 Frame = +3

Query: 99  NILVQMLKDED--NKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVR 257
           NI +QML+  D  N  C DC + K   W S N+ + LCI C+GIHR+LG HISK R
Sbjct: 714 NIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTR 769



 Score = 34.3 bits (75), Expect = 0.017
 Identities = 21/87 (24%), Positives = 46/87 (52%)
 Frame = +2

Query: 248  QSESVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKY 427
            ++ S+ LDS + +  V L ++GN+    VYE  L +   +P+ + + +  ++  + QKKY
Sbjct: 767  KTRSLLLDSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQ--VKLAFAQKKY 824

Query: 428  IAKEWVPPQLPKVNWDKEIDEEMDRQK 508
            +   ++      V+ D  + E +++ K
Sbjct: 825  VEHAFI--DFAGVDADATLLEGLEQNK 849


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = +3

Query: 51  SKSEKDRAKQIQDRCQNILVQMLKD--EDNKYCVDCDAKGP-RWASWNLGIFLCIRCAGI 221
           S+   D  ++ Q +  + LV+ LK+    ++ C DC+      W + N  + LCI C+GI
Sbjct: 655 SRHNSDSKEKKQTKSPS-LVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGI 713

Query: 222 HRNLGVHISKVR 257
           HR+LG HI+K+R
Sbjct: 714 HRSLGTHITKIR 725



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 257 SVNLDSWTPEQVVSLQQMGNSRARAVYEANLPD-SFRRPQNDMSLESFIRAKYEQKKYI 430
           S+ LD + PE V  L   GNS    +YE  + D   +  +N      F++ KY  K++I
Sbjct: 726 SLTLDKFNPETVDLLYATGNSFVNEIYEGGITDWKIKNFENQERRVQFVKDKYLYKRFI 784


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEM 496
           +R   +Q K    EW+ P + K  W +E DE++
Sbjct: 37  VRKTPKQCKARWYEWIDPSIKKTEWSREEDEKL 69


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -3

Query: 444 THSFAMYFFC-SYLARMNDSKDMSFCGRLNE-SGKFASYTARARLFPICCSDTTCSGVHE 271
           T++ A++     Y  R   +  M    RL E + K++  +    +  + CS+   +G+  
Sbjct: 492 TNTNALFHLAMQYSERRAITDAMQIVRRLLEVNPKYSIVSWHLLVLCVSCSEQYAAGIKL 551

Query: 270 SRLTLSLWRCEHPDSDGSQRSGCTGIYPNSMKPIVDLL 157
                  W   H + DG+     T +  N    +VDLL
Sbjct: 552 IDSVFETWGINHVNEDGTIEISLTNLTFNDRCALVDLL 589


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 167 TMGFMEFGYIPVHPLRWDPSESGCSHL--QSESVNLDSWTPEQVVSLQQM 310
           T+G   +G IPVH     P +S    L    + + L   TPEQ   L+ +
Sbjct: 468 TLGIEYYGNIPVHIQENAPKDSSIPPLFEFDDDLELSDLTPEQFAYLEML 517


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 188 GYIPVHPLRWDPSESGCSHLQSES-VNLDSWTPEQVVSLQQ 307
           GY  +HP+ WD       +   E+ ++  SWT E +  +++
Sbjct: 95  GYKVIHPMGWDAFGLPAENAAIENGISASSWTYENIKKMKE 135


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 224 SESGCSHLQSESVNLDSWTPEQVVSL---QQMGNSRARAVYEANLPDSFRRPQNDMSLES 394
           SES  S  +SES + +S   E+VV     ++ G+S + +  E++   S     +D S +S
Sbjct: 168 SESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDS 227

Query: 395 FIRAKYEQKK 424
              +  E +K
Sbjct: 228 ESESSSEDEK 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,979
Number of Sequences: 5004
Number of extensions: 63731
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)