Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0406.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   5.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   5.4  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   9.5  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 782 TGMVLDWPLGPLVPDRTWSRLRPWLGLDASILPTIS 675
           TG  +   LGP+ P +  S   P+ G+DA I+  ++
Sbjct: 426 TGSHIVTSLGPVTPMKPGSATLPFFGIDAVIIDPLT 461


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -2

Query: 499 VLIIYWEHF*LVFLSLNRRLFKIALYFSFFIIFAHLCLIFRFFFVYVTIFST 344
           ++I ++  F + F ++  +   + L+F FF + A +  ++  F  +V + ST
Sbjct: 287 LIICFFALFVVRFFAITIQSIHLGLWFCFFFLTACISALYILFGAFVALPST 338


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 485 VNN*NIEYRATPHHSHNIFKSFNYSQF 565
           ++N  I   A  H+ H+I+ ++NY QF
Sbjct: 213 ISNNPIINGAAHHNGHHIYFNYNYGQF 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,009
Number of Sequences: 5004
Number of extensions: 62478
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)