Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0406.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    31   1.1  
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857...    28   7.5  
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    28   9.9  

>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 107 CRSRQKHQVCKTSNASNLSTTQFLKQAHTFQSVLQKL 217
           CR R +   C+TS AS++ ++++L Q    +S L++L
Sbjct: 600 CRRRNRMFDCQTSTASSMKSSEYLNQQKFVRSKLEEL 636


>11_04_0001 +
           11984639-11984875,11984989-11985278,11985361-11985719,
           11985797-11985984,11986058-11986247,11986497-11986631,
           11986694-11986947
          Length = 550

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 709 SQGRS-RLQVLSGTRGPKGQSKTIPVTQNP 795
           +Q RS R Q   G+ GPK QS+T P T NP
Sbjct: 91  TQRRSPRCQTGQGSGGPKIQSETQPNTSNP 120


>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = +1

Query: 652 CKTWVPHIEIVGKILASKPSQGRSRLQVLS--------GTRGPKGQSKTIPVTQNP 795
           C  W+ H+  +  I +S    G+ +  +L         GTR P  +S++ P  QNP
Sbjct: 510 CIQWIEHMVPIPCIKSSMEWVGKKKTHLLQKLGSFIMRGTRNPTEESRSTPRAQNP 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,858,485
Number of Sequences: 37544
Number of extensions: 338926
Number of successful extensions: 1017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)