Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0406.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59546| Best HMM Match : Collagen (HMM E-Value=0.003)                32   0.62 
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   31   0.82 
SB_55685| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)                  31   1.1  
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)                29   3.3  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    29   4.4  
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)                29   4.4  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   5.8  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     29   5.8  
SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                28   7.6  

>SB_59546| Best HMM Match : Collagen (HMM E-Value=0.003)
          Length = 157

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQN 773
           GIQ  PG +  PGP   QG +GP  N
Sbjct: 4   GIQGNPGYQGVPGPRGMQGEEGPAGN 29


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 439 FKIALYFSFFIIFAHLCLIFRFFFVYVTIFSTKDYF 332
           F +  YF  F++FA +  IF FFF +V IF    +F
Sbjct: 687 FVVYPYFFLFVVFAFVVFIFIFFFAFV-IFVFNAFF 721


>SB_55685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -3

Query: 696 QYFTHNLDMWYPSFTSNLIIKYAIHVFDYCLLIAGHYLGSELIQN*E*LK--DLKMLCEW 523
           +Y       W  + T NLI    IH  DYCL+  G Y   EL +    L   D  +  +W
Sbjct: 165 RYLMSEASKWITNHT-NLISVAVIHAADYCLVRTG-YFYRELAETLSGLMSIDHSVFLDW 222

Query: 522 CGVARYSM 499
            G+  Y +
Sbjct: 223 LGLCLYDV 230


>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
          Length = 831

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 89  YT*NRFCRSRQKHQVCKTSNASNLSTTQ 172
           Y  N+ CR R K+  C TSN+S+L+TT+
Sbjct: 439 YCRNKRCR-RDKNSACATSNSSSLATTE 465


>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
          Length = 346

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNH 776
           G Q  PG   APGP    GP GP   H
Sbjct: 104 GYQGMPGIAGAPGPRGPPGPMGPPGPH 130


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
           G++ +PG+  +PG     GPQGP
Sbjct: 181 GVRGQPGAIGSPGDAGRAGPQGP 203


>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
          Length = 88

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQG 761
           GI+  PG K   GPI  +GPQG
Sbjct: 4   GIEGPPGPKGDRGPIGPRGPQG 25


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQG 761
           G Q  PG K  PGP   +GP+G
Sbjct: 297 GTQGLPGPKGPPGPTGPEGPKG 318


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 209  VKQTEMYV--PVSKTVLYLNLKHLMFCILGVSAYSGKSDFMYNE 84
            V QT +Y   P+  TVL   +  +MF ILGV  + GK  F Y E
Sbjct: 1099 VVQTLLYSLKPIGNTVLIAAIFFVMFGILGVQLFKGK--FYYCE 1140


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP--VQNHSGNP 788
           G+  KPG   + GP   QG  GP   Q  +GNP
Sbjct: 498 GLIGKPGEMGSSGPAGPQGSAGPRGEQGFTGNP 530


>SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 767 DWPLGPLV-PDRTWSRLRPWLGLDASILPTISICGTQVLHQTLL*STQYTCL 615
           +W  G LV  +  + ++RP++  D S+LPT+ +   + +   +L      CL
Sbjct: 362 EWRGGELVFNESAFRKIRPYIPEDVSVLPTLRVAIVEYVPWVMLSKNVSDCL 413


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
           G+Q  PG     GP   QGP G V N  G P
Sbjct: 559 GLQGTPGQNGLQGPPGPQGPMG-VNNSIGPP 588


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 729  EPTSTLAWLGCQYFTHNLDMWYPSFTSNLIIKYAIHVFDYCLLIAGHYLG 580
            EPT +   + C  F HN  +     T  +I  Y +H FD CL+    ++G
Sbjct: 913  EPTPSC--INCTGFNHNGTLLVTGATDGMIRLYDMHTFD-CLMAMQAHVG 959


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,019,520
Number of Sequences: 59808
Number of extensions: 428375
Number of successful extensions: 1706
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)