Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0406.Seq
         (797 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoi...    33   1.6  
M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.            33   1.6  
M63730-1|AAA51839.1|  349|Homo sapiens BPAG2 protein.                  33   1.6  
AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alph...    33   1.6  
AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph...    33   1.6  
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.               32   2.1  
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.              32   2.8  
X05610-1|CAA29098.1|  459|Homo sapiens alpha (2) chain protein.        31   4.8  
M24766-1|AAA52043.1|  673|Homo sapiens alpha-2 type IV collagen ...    31   4.8  
BC080644-1|AAH80644.1|  362|Homo sapiens COL4A2 protein protein.       31   4.8  
AL161773-3|CAH71366.2| 1712|Homo sapiens collagen type IV alpha ...    31   4.8  
AL159153-1|CAH72050.2| 1712|Homo sapiens collagen type IV alpha ...    31   4.8  
AL139385-2|CAI17005.2| 1712|Homo sapiens collagen type IV alpha ...    31   4.8  
M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collage...    30   8.4  
M33653-1|AAA52047.1|  245|Homo sapiens alpha-2 type IV collagen ...    30   8.4  
M20803-4|AAA51990.1|  152|Homo sapiens COL13A1 protein.                30   8.4  
M20803-2|AAA51988.1|  153|Homo sapiens COL13A1 protein.                30   8.4  
M20803-1|AAA51987.1|  167|Homo sapiens COL13A1 protein.                30   8.4  
AY393455-1|AAR32507.1|  149|Homo sapiens immunoglobulin heavy ch...    30   8.4  
AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alph...    30   8.4  
AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alph...    30   8.4  
AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen prot...    30   8.4  

>U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoid
           antigen 2/type XVII collagen protein.
          Length = 1497

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
           G +  PG+   PGP+ H GPQGP
Sbjct: 582 GDRGFPGTPGIPGPLGHPGPQGP 604


>M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.
          Length = 1532

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
           G +  PG+   PGP+ H GPQGP
Sbjct: 617 GDRGFPGTPGIPGPLGHPGPQGP 639


>M63730-1|AAA51839.1|  349|Homo sapiens BPAG2 protein.
          Length = 349

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
           G +  PG+   PGP+ H GPQGP
Sbjct: 75  GDRGFPGTPGIPGPLGHPGPQGP 97


>AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alpha 1
           protein.
          Length = 1497

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
           G +  PG+   PGP+ H GPQGP
Sbjct: 582 GDRGFPGTPGIPGPLGHPGPQGP 604


>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
           protein.
          Length = 1415

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
           G +  PG+   PGP+ H GPQGP
Sbjct: 582 GDRGFPGTPGIPGPLGHPGPQGP 604


>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
          Length = 1336

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP--VQNHSG 782
           G Q  PG + + GP  H GPQGP   Q+H G
Sbjct: 688 GPQGPPGPQGSSGPQGHMGPQGPPGPQSHIG 718



 Score = 30.7 bits (66), Expect = 6.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 690 NTGIQAKPGSKSAPGPIRHQGPQGP--VQNHSG 782
           ++G Q   G +  PGP  H GPQGP   Q H G
Sbjct: 698 SSGPQGHMGPQGPPGPQSHIGPQGPPGPQGHLG 730


>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
          Length = 1336

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGP--VQNHSG 782
           G Q  PG + + GP  H GPQGP   Q H G
Sbjct: 688 GPQGPPGPQGSSGPQGHMGPQGPPGPQGHIG 718



 Score = 30.3 bits (65), Expect = 8.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 690 NTGIQAKPGSKSAPGPIRHQGPQGP--VQNHSG 782
           ++G Q   G +  PGP  H GPQGP   Q H G
Sbjct: 698 SSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLG 730


>X05610-1|CAA29098.1|  459|Homo sapiens alpha (2) chain protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
           G+ A PG +   GPI HQGP G  +   G P S
Sbjct: 191 GVSAVPGFRGDEGPIGHQGPIGQ-EGAPGRPGS 222


>M24766-1|AAA52043.1|  673|Homo sapiens alpha-2 type IV collagen
           protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
           G+ A PG +   GPI HQGP G  +   G P S
Sbjct: 405 GVSAVPGFRGDEGPIGHQGPIGQ-EGAPGRPGS 436


>BC080644-1|AAH80644.1|  362|Homo sapiens COL4A2 protein protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
           G+ A PG +   GPI HQGP G  +   G P S
Sbjct: 94  GVSAVPGFRGDEGPIGHQGPIGQ-EGAPGRPGS 125


>AL161773-3|CAH71366.2| 1712|Homo sapiens collagen type IV alpha 2
            protein.
          Length = 1712

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 696  GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
            G+ A PG +   GPI HQGP G  +   G P S
Sbjct: 1444 GVSAVPGFRGDEGPIGHQGPIGQ-EGAPGRPGS 1475


>AL159153-1|CAH72050.2| 1712|Homo sapiens collagen type IV alpha 2
            protein.
          Length = 1712

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 696  GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
            G+ A PG +   GPI HQGP G  +   G P S
Sbjct: 1444 GVSAVPGFRGDEGPIGHQGPIGQ-EGAPGRPGS 1475


>AL139385-2|CAI17005.2| 1712|Homo sapiens collagen type IV alpha 2
            protein.
          Length = 1712

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 696  GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
            G+ A PG +   GPI HQGP G  +   G P S
Sbjct: 1444 GVSAVPGFRGDEGPIGHQGPIGQ-EGAPGRPGS 1475


>M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collagen
           protein.
          Length = 623

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 524 SGLDGRPGPPGTPGPIGVPGPAGP 547


>M33653-1|AAA52047.1|  245|Homo sapiens alpha-2 type IV collagen
           protein.
          Length = 245

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 146 SGLDGRPGPPGTPGPIGVPGPAGP 169


>M20803-4|AAA51990.1|  152|Homo sapiens COL13A1 protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 53  SGLDGRPGPPGTPGPIGVPGPAGP 76


>M20803-2|AAA51988.1|  153|Homo sapiens COL13A1 protein.
          Length = 153

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 54  SGLDGRPGPPGTPGPIGVPGPAGP 77


>M20803-1|AAA51987.1|  167|Homo sapiens COL13A1 protein.
          Length = 167

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 68  SGLDGRPGPPGTPGPIGVPGPAGP 91


>AY393455-1|AAR32507.1|  149|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 149

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 769 WTGPWGPWCRIGPGADFDPGLAWMPVFYP---QSRY 671
           +TG W  W R  PG     GL WM +FYP    SRY
Sbjct: 25  FTGYWIGWVRQMPGK----GLEWMGIFYPGDSDSRY 56


>AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 695

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 596 SGLDGRPGPPGTPGPIGVPGPAGP 619


>AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 618 SGLDGRPGPPGTPGPIGVPGPAGP 641


>AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen
           protein.
          Length = 717

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 693 TGIQAKPGSKSAPGPIRHQGPQGP 764
           +G+  +PG    PGPI   GP GP
Sbjct: 618 SGLDGRPGPPGTPGPIGVPGPAGP 641


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,815,015
Number of Sequences: 237096
Number of extensions: 2295379
Number of successful extensions: 12591
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12251
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)