Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0406.Seq
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 33 0.24
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 32 0.41
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 32 0.41
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 30 1.7
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 29 2.9
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 29 3.9
U64836-1|AAX22289.1| 321|Caenorhabditis elegans Serpentine rece... 29 5.1
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 5.1
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z82075-2|CAB60333.1| 328|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.7
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 6.7
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 6.7
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 28 6.7
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 6.7
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 6.7
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 28 6.7
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 28 6.7
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 28 6.7
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 678 DCG*NTGIQAKPGSKSAPGPIRHQGPQGP 764
D G + G Q G PGP+ QGPQGP
Sbjct: 245 DGGNSEGPQGPQGDAGRPGPVGEQGPQGP 273
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
G Q PG PGP+ QGP GP Q G P
Sbjct: 260 GGQGPPGDAGGPGPVGGQGPPGP-QGPQGPP 289
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
G Q PG PGP+ QGP GP Q G P
Sbjct: 260 GGQGPPGDAGGPGPVGGQGPPGP-QGPQGPP 289
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQG 761
G KPGS+ PGP H GP G
Sbjct: 158 GAPGKPGSEGPPGPPGHDGPNG 179
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
G +PGS +APGP GP GP G+P
Sbjct: 219 GAPGQPGSGNAPGPAGPPGPAGP-NGQPGHP 248
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
G +PGS +APGP GP GP G+P
Sbjct: 219 GAPGQPGSGNAPGPAGPPGPAGP-NGQPGHP 248
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
G +PGS S PGP GP GP G+P
Sbjct: 217 GAPGQPGSGSTPGPAGPPGPPGP-NGQPGHP 246
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +3
Query: 693 TGIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
TG Q GSK PGP+ GPQGP N G P
Sbjct: 527 TGKQGPEGSKGYPGPM---GPQGPPGN-DGEP 554
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 690 NTGIQAKPGSKSAPGPIRHQGPQGP 764
N G A PG + PGP GP+GP
Sbjct: 203 NQGEDAGPGRQGMPGPTGPPGPRGP 227
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 702 QAKPGSKSAPGPIRHQGPQGPVQNHSG 782
++ PG + PGP GPQGP + SG
Sbjct: 247 KSPPGPRGPPGPAGPDGPQGP-EGRSG 272
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGP--VQNHSG 782
G +PGS APGP QGP GP Q H G
Sbjct: 233 GQAGRPGSDGAPGP---QGPPGPPGQQGHPG 260
>U64836-1|AAX22289.1| 321|Caenorhabditis elegans Serpentine
receptor, class x protein92, isoform b protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 127 VFLPTPAKAILCIMNKTIMIVFLY 56
VFLPT I + N TI++VF+Y
Sbjct: 115 VFLPTKYATIFSLFNITIILVFIY 138
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGP--VQNHSGNP 788
G PG + PGP GPQGP GNP
Sbjct: 207 GAPGTPGGNALPGPPGPPGPQGPPGADGLPGNP 239
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
G PG S PGP GP GP GNP S
Sbjct: 184 GPDGAPGGGSGPGPAGPAGPPGP----DGNPGS 212
>Z82075-2|CAB60333.1| 328|Caenorhabditis elegans Hypothetical
protein W07A8.5 protein.
Length = 328
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 412 FIIFAHLCLIFRFFFVYVTIFSTKD 338
FII A L LIF FF ++ TI D
Sbjct: 16 FIIVASLLLIFEFFLLFATISHRND 40
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
G PG S PGP GP GP GNP S
Sbjct: 184 GPDGAPGGGSGPGPAGPAGPPGP----DGNPGS 212
>Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical
protein F54C9.4 protein.
Length = 287
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
G Q +PG G QGPQGP Q G P
Sbjct: 224 GSQGEPGKNGDSGVDGEQGPQGP-QGPDGQP 253
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 693 TGIQAKPGSKSAPGPIRHQGPQGPVQNHSGNP 788
T I+ PG + PGP +GP G V G P
Sbjct: 132 TCIKCPPGPRGPPGPQGEEGPSGDV-GEDGEP 162
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 714 GSKSAPGPIRHQGPQGPVQNHSG 782
GS APG QGPQGP ++ G
Sbjct: 242 GSPGAPGNPGSQGPQGPAGDNGG 264
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 714 GSKSAPGPIRHQGPQGPVQNHSG 782
GS APG QGPQGP ++ G
Sbjct: 304 GSPGAPGNPGSQGPQGPAGDNGG 326
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPV--QNHSGNP 788
G + PG APGP GP GP Q SG P
Sbjct: 268 GEKGWPGPPGAPGPGGMPGPNGPTGEQGPSGTP 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
G+ KPG GPI G GP+ + P++
Sbjct: 201 GMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEA 233
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 714 GSKSAPGPIRHQGPQGPVQNHSG 782
GS APG QGPQGP ++ G
Sbjct: 241 GSPGAPGNPGSQGPQGPAGDNGG 263
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 714 GSKSAPGPIRHQGPQGPVQNHSG 782
GS APG QGPQGP ++ G
Sbjct: 241 GSPGAPGNPGSQGPQGPAGDNGG 263
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 714 GSKSAPGPIRHQGPQGPVQNHSG 782
GS APG QGPQGP ++ G
Sbjct: 242 GSPGAPGNPGSQGPQGPAGDNGG 264
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 714 GSKSAPGPIRHQGPQGPVQNHSG 782
GS APG QGPQGP ++ G
Sbjct: 242 GSPGAPGNPGSQGPQGPAGDNGG 264
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPV--QNHSGNP 788
G + PG APGP GP GP Q SG P
Sbjct: 268 GEKGWPGPPGAPGPGGMPGPNGPTGEQGPSGTP 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGPVQNHSGNPKS 794
G+ KPG GPI G GP+ + P++
Sbjct: 201 GMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEA 233
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 696 GIQAKPGSKSAPGPIRHQGPQGP 764
G PG++ APG + GP+GP
Sbjct: 299 GSMGPPGNRGAPGRVGLNGPRGP 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,785,744
Number of Sequences: 27780
Number of extensions: 353235
Number of successful extensions: 1990
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -