Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0406.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.35 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   7.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   7.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 702 QAKPGSKSAPGP--IRHQGPQGPVQNHSGNP 788
           Q++  S  APGP    HQ PQ P +    NP
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNP 42


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 212  FVKQTEMYVPVSKTVLYLNLKHLMFCIL-GVSAYSGKSDFMYNE 84
            F+    + VPV   +L + +  ++ C+L G    S K D +Y +
Sbjct: 1581 FMANLNLVVPVVAAILVIIVAVIVICVLRGKGHGSDKDDVVYQQ 1624


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 626 IAYFIIRFDVKLGYHISRLWVKYW---HPSQARVEVG 727
           + Y++I+  +  G  +   WV +W   + + ARV +G
Sbjct: 220 MGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 256


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 626 IAYFIIRFDVKLGYHISRLWVKYW---HPSQARVEVG 727
           + Y++I+  +  G  +   WV +W   + + ARV +G
Sbjct: 220 MGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 256


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 626 IAYFIIRFDVKLGYHISRLWVKYW---HPSQARVEVG 727
           + Y++I+  +  G  +   WV +W   + + ARV +G
Sbjct: 159 MGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 195


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 426 YILAFLLSSLTCV 388
           YIL F+L ++TCV
Sbjct: 4   YILLFVLVTITCV 16


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 731 WSRLRPWLGLDASILPTISI 672
           WSR   WL LD S +   S+
Sbjct: 23  WSRGNTWLSLDNSNMSMSSV 42


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 426 YILAFLLSSLTCV 388
           YIL F+L ++TCV
Sbjct: 4   YILLFVLVTITCV 16


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 731 WSRLRPWLGLDASILPTISI 672
           WSR   WL LD S +   S+
Sbjct: 23  WSRGNTWLSLDNSNMSMSSV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,818
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)