Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0403.Seq
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 155  PTPLAQ-GPVPGPXRTGALRAXRGXEQRARV 66
            P P+AQ GP P P   G LRA RG  + ARV
Sbjct: 1544 PPPMAQAGPAP-PVGGGGLRAARGASRYARV 1573


>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -1

Query: 378 LFHTFHAGNVRNINV*TQRTRDYTVTIILNYVHRSRXXXKIQDELLFFQLNLHXAFDCIS 199
           +FH +  G+   I +   R + +TVTI   +    +     +D L FF+ N   AF  + 
Sbjct: 222 VFHLWPRGHFTLIAL-ANRDKTFTVTIFAPFSEFEKHMSTSEDVLSFFEENFPDAFLLLG 280

Query: 198 LEH 190
            EH
Sbjct: 281 KEH 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,021
Number of Sequences: 27780
Number of extensions: 211161
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)