Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0403.Seq
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden...    29   2.6  
At5g25050.1 68418.m02969 integral membrane transporter family pr...    28   6.0  
At1g26330.1 68414.m03211 hypothetical protein                          28   6.0  

>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
           identical to AKT1 [Arabidopsis thaliana]
           gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 857

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -1

Query: 357 GNVRNINV*-TQRTRDY--TVTIILNYVHRSRXXXKIQDELL 241
           GN+ N+ V  T RTR++  T+    N+ HR+    ++QD++L
Sbjct: 286 GNMTNLVVHGTSRTRNFRDTIQAASNFAHRNHLPPRLQDQML 327


>At5g25050.1 68418.m02969 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains 7 transmembrane domains;
           contains Pfam PF03092: BT1 family; contains TIGRFAMS
           TIGR00788: folate/biopterin transporter
          Length = 499

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 446 MXCISVCNPNNYLVVSLTLTRLNEHFNIFY 535
           M C  V  P+ Y+ +SLTL  LN H  +FY
Sbjct: 256 MKCSDVWRPSLYMYISLTL-GLNIHEGLFY 284


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 374  NSYEIVMLQIVHNNAKLLLQI*YKMXCISVCNPNNYLVV----SLTLTRLNEHFN 526
            N+  IV ++  H +    LQ    + C+ VC+PNN +      +L +  +N H++
Sbjct: 914  NAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHWS 968


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,692,833
Number of Sequences: 28952
Number of extensions: 182176
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)