Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0402.Seq
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   1.00 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.3  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   4.0  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   7.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 40  AQRVPAPRAKVSAETALARG 99
           A+R PAP  + + + A ARG
Sbjct: 273 AERAPAPAVRAAGDAAAARG 292



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -2

Query: 228 RNLSNRLMAPMSTSAXRSNQTLRQRNTVXAPSLAPVVTSPXSDSAXKRSFG*DFCSRS 55
           R L+N  +   +    R  +    +    +PS    V+    DS+  R F  + C+RS
Sbjct: 86  RKLNNNNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSPEVKDSSRDRPFTCEVCNRS 143


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 510 RSGVSMHQQQLPIQSEPVQSR 448
           + G +MHQQ  P Q  P+Q +
Sbjct: 193 QQGANMHQQGPPHQQPPIQQQ 213


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 510 RSGVSMHQQQLPIQSEPVQSR 448
           + G +MHQQ  P Q  P+Q +
Sbjct: 195 QQGANMHQQGPPHQQPPIQQQ 215


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 247 PHLHLGQKPVEQIDGPDE 194
           P + +  KP ++IDG D+
Sbjct: 66  PEIDIEDKPAQKIDGEDD 83


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 299 SSMDMFMQETVMHGTD 252
           SS+D+ +QE V  GT+
Sbjct: 68  SSVDVLLQEAVFEGTN 83


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 544 WR*PCATPPAPTLGPAN 594
           WR  C  PP   L P N
Sbjct: 334 WRSYCIQPPCGQLNPIN 350



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 324 KDSVNRGAGVYLTIGLHRWRRVQDVSSHSGQAGIGTRNC 440
           KD+     G + T   H WR V +    +G   +G   C
Sbjct: 484 KDAWYLDHGFWGTTEYHNWRVVYNNKIPTGDGALGGEVC 522


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = +1

Query: 658 MTVPGKRFSTC---TTLPGNCKFHCHM 729
           +TVP   F+      T PG   FHCH+
Sbjct: 580 VTVPDGGFTIIRFKATNPGYWLFHCHI 606


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,739
Number of Sequences: 336
Number of extensions: 3463
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)