Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0402.Seq
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    33   0.067
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    28   1.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   4.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.7  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 196 HRGHQSVRQVSDQDEGEAVSVPCITVS-CMNISIDEYAARTNIKRTVSIEELVSISQSAC 372
           H   QS RQ+  +     +S+   TVS    +  +   ++TN K+      L  +S S C
Sbjct: 777 HDSSQSARQLKARSTATTISISLSTVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTC 836

Query: 373 TAGDVSRMSR 402
            A  V+++ +
Sbjct: 837 NANSVNKLMK 846


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 333 HCPFYVGPSRILVYGYVHAGDSNARHRHGLTFILVRNLSNRLMAPMSTSAXRSNQTL 163
           HC      S  ++YG  + G +  + RH L  ++V   ++ +  P +  + + N TL
Sbjct: 21  HCDLKRRVSIKIIYGLGNPGSAFVKSRHSLGKLMVSMYADSMAFPKNWPSTKENLTL 77


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 543 VDSPARFPAPVRSGVSMHQQQLPIQSEPVQSRHADSSSCQSQL---VLNDSRHPGHVAS 376
           VDS  RFP+   +G++  +  LP  +  V ++H    +  + L    LN +    H ++
Sbjct: 715 VDSTPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHAST 773


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 552 LSPVDSPARFPAPVR 508
           LSP  SPAR P+P+R
Sbjct: 214 LSPTRSPARTPSPIR 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,300
Number of Sequences: 5004
Number of extensions: 55974
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)