Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0402.Seq
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0244 + 2549102-2549158,2549205-2549334,2549422-2549559,255...    31   1.5  
03_05_0695 - 26851370-26851495,26852949-26853398                       29   4.7  
03_05_0572 + 25727299-25727405,25727720-25727780                       29   4.7  
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    28   8.1  

>10_01_0244 +
           2549102-2549158,2549205-2549334,2549422-2549559,
           2550078-2550205,2550346-2550396
          Length = 167

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 CLSHNRPAPLATCPGCLESFRTSWDWHEE 436
           C+S ++P     CP CLE FR S ++ EE
Sbjct: 91  CVSEDKPDEEDVCPICLEVFRYSPEYDEE 119


>03_05_0695 - 26851370-26851495,26852949-26853398
          Length = 191

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +3

Query: 255 CAVHYCLLHEHIHRRV--CG*DQHKKDSVN--RGAG--VYLTIG 368
           C  HYC LH H    +   G + H++D  +   GAG  V LT+G
Sbjct: 12  CGGHYCQLHHHRPEEIAGAGAESHRRDGSSGCGGAGPMVVLTLG 55


>03_05_0572 + 25727299-25727405,25727720-25727780
          Length = 55

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 387 VQDVSSHSGQAG-IGTRNCQRDGSALAQTVSEA 482
           V+ V SH G+ G +GTR  +  G ALA T +EA
Sbjct: 3   VEGVDSHGGKVGGMGTRGGKVGGMALAATRAEA 35


>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 546 PVDSPARFPAPVRSGVSMHQQQLPIQSEPVQSRHADSSSCQS 421
           P+ S   FP    SGVS HQ Q   Q +P + +    SS QS
Sbjct: 688 PIASLHSFPRRTSSGVSPHQSQ---QQQPEEQQSIPQSSNQS 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,761,220
Number of Sequences: 37544
Number of extensions: 454691
Number of successful extensions: 1213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)