Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0402.Seq
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)               31   1.6  
SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_28422| Best HMM Match : TerC (HMM E-Value=4)                        28   8.3  
SB_38183| Best HMM Match : EGF (HMM E-Value=3.6e-08)                   28   8.3  

>SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 346 LVSISQSACTAGDVSRMSRVIQDKLG 423
           L+ +S  +CT  D+ RM R+I DKLG
Sbjct: 14  LIGVSGLSCTPSDLLRMERIILDKLG 39


>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
          Length = 376

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 531 ARFP---APVRSGVSMHQQQLPIQSEPVQSRHADSSSCQSQLVLNDSRHPGHVA 379
           AR+P   A  RS    HQ Q+P  + P Q    DS+  +S      SR P  +A
Sbjct: 304 ARYPVDSAKARSPRGQHQSQIPTWTAPQQETPVDSAIAKSPRGQRQSRKPPWIA 357


>SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 65  QKSQPKLRLXAESEXGEVTTGARDGAXTVLRCLKVWFDLXADVLIGA 205
           Q+  P LR     E   +T  AR+    VL C K WFD   + ++ A
Sbjct: 64  QRRLPLLRNATVGEAEGLTEFARECTPRVLSCRKNWFDCAKNKVMNA 110


>SB_28422| Best HMM Match : TerC (HMM E-Value=4)
          Length = 465

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 291 HRRVCG*DQHKKDSVNRGAGVYLTIGLHRWRRVQDVSSHSGQAGI 425
           HR V    + K+  VN     Y+ +  H WR + D+ +H GQ+GI
Sbjct: 338 HRMVVN-PKPKERCVNDTVLYYVNLAQHWWRTI-DLLTHLGQSGI 380


>SB_38183| Best HMM Match : EGF (HMM E-Value=3.6e-08)
          Length = 51

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 447 HADSSSCQSQLVLNDSRHPGHVASGAGRL*DRHQLLY*HC-PFYVGP 310
           HA+  SC    V+N + HP    +G GR  +R      HC P + GP
Sbjct: 2   HAERDSCHRLAVVNHNCHPNPCQNG-GRCEERDDGYDCHCVPPFQGP 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,319,945
Number of Sequences: 59808
Number of extensions: 501417
Number of successful extensions: 1262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)