Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0402.Seq
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   7.3  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   7.3  

>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 549 SPVDSPARFPAPVRSGVSMHQ-QQLPIQSEPVQSRHADSSSCQSQLVLNDSRHP 391
           +P    A+ P P+  GV+ HQ     IQ  P + R A++   Q+    N  + P
Sbjct: 246 APASRMAQQPVPLHQGVAPHQAAPQTIQQTPARGRPANAQLAQNAQQRNPQQVP 299


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 549 SPVDSPARFPAPVRSGVSMHQ-QQLPIQSEPVQSRHADSSSCQSQLVLNDSRHP 391
           +P    A+ P P+  GV+ HQ     IQ  P + R A++   Q+    N  + P
Sbjct: 246 APASRMAQQPVPLHQGVAPHQAAPQTIQQTPARGRPANAQLAQNAQQRNPQQVP 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,370,450
Number of Sequences: 27780
Number of extensions: 354974
Number of successful extensions: 934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)