Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0402.Seq
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 516 PVRSGVSMHQQQLPIQSEPVQSRHADSSSCQSQLVLND 403
           P  S +SM    +PI S P  S   +S + +   V+ND
Sbjct: 842 PTTSVISMSGTTVPITSLPASSTSINSITVEKD-VIND 878



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 375  RWRRVQDVSSHSGQAGIGTRNCQRDGSALAQTVSEAVADAC*RRSVLAQESELVNL 542
            +++ V    + SGQ+ I     Q+  S  AQTV    A    +  VLA  ++ V +
Sbjct: 1161 QYQVVSQAQTSSGQSKIIASTQQQQQSQQAQTVRMVTAQLAGKPIVLASGNKNVGV 1216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,051
Number of Sequences: 438
Number of extensions: 3881
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)