Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0402.Seq
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 29 2.9
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 29 2.9
At3g06360.1 68416.m00734 arabinogalactan-protein (AGP27) 29 5.1
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 29 5.1
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 29 5.1
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 28 6.8
At5g38037.1 68418.m04583 hypothetical protein 28 9.0
At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si... 28 9.0
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 28 9.0
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 28 9.0
At1g34460.1 68414.m04281 cyclin, putative strong similarity to c... 28 9.0
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas... 28 9.0
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +3
Query: 519 QESELVNLLEIAVCDATCANARTSELALVLLFHKLEKQLVRMV*KRNDCSREKVFYMYDF 698
Q+ E +E AV TC+ T L LL H E++ + ++N+C + + M+D
Sbjct: 1162 QKLETSKSVEAAVIRITCSRTSTQVGDLKLLDHNYERKFDEIKSEKNECLK-SLEQMHDV 1220
Query: 699 ARQ 707
A++
Sbjct: 1221 AKK 1223
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +3
Query: 519 QESELVNLLEIAVCDATCANARTSELALVLLFHKLEKQLVRMV*KRNDCSREKVFYMYDF 698
Q+ E +E AV TC+ T L LL H E++ + ++N+C + + M+D
Sbjct: 1162 QKLETSKSVEAAVIRITCSRTSTQVGDLKLLDHNYERKFDEIKSEKNECLK-SLEQMHDV 1220
Query: 699 ARQ 707
A++
Sbjct: 1221 AKK 1223
>At3g06360.1 68416.m00734 arabinogalactan-protein (AGP27)
Length = 125
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -2
Query: 246 LTFILVRNLSNRLMAPMSTSAXRSNQTLRQRNTVXAPSLAPVVTSPXSDS 97
+TFI + +LS L +P +T+ S+QT+ +P +AP++ SP S
Sbjct: 10 ITFIFLSSLS--LSSP-TTNTIPSSQTISPSEEKISPEIAPLLPSPAVSS 56
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 252 HGLTFILVRNLSNRLMAPMSTSAXRSNQ-TLRQ-RNTVXAPSLAPVVTSPXSDSAXKR 85
+G +L+RNLS+ + S + +Q ++RQ R+ + L+P++ P SDS +R
Sbjct: 1598 YGEDNMLMRNLSSERSSGNSVTLDSGSQMSMRQSRSALLWSVLSPIINMPISDSKRQR 1655
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 355 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 450
IS ++CT ++ ++V+ ++ G+ +GT++ T
Sbjct: 230 ISNASCTTNCLAPFAKVLDEEFGIVKGTMTTT 261
>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
[Arabidopsis thaliana] GI:1360646
Length = 445
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 50 YLLLEQKSQPKLRLXAESEXGEVTTGARDGAXTVLRCLKVWFDLXADVLIGAINLFDRFL 229
Y +E++SQPK+ + ++E E R L + + F+L + L +N+ DRFL
Sbjct: 190 YKEVEKESQPKMYMHIQTEMNEKM---RAILIDWLLEVHIKFELNLETLYLTVNIIDRFL 246
Query: 230 T 232
+
Sbjct: 247 S 247
>At5g38037.1 68418.m04583 hypothetical protein
Length = 226
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 324 FYVGPSRILVYGYVHAGDSNARHRHGLTFI 235
F VG SR+ V+G G R HG TF+
Sbjct: 51 FLVGKSRVYVFGEKITGFRFWRENHGFTFL 80
>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
similar to acetylornithine deacetylase
(Acetylornithinase, AO; N-acetylornithinase, NAO)
[Dictyostelium discoideum] SWISS-PROT:P54638
Length = 440
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 223 PVEQIDGPDEHVRG*IEPDFETAQHG-ACAIPSAGRH 116
PV + PDE++RG + F+ A G AC + S G H
Sbjct: 329 PVSKYVLPDENLRGRLTLSFDEASAGVACNLDSPGFH 365
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 355 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 450
IS ++CT ++ +V+ K G+ +GT++ T
Sbjct: 208 ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 239
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 173 FDLXADVLIGAINLFDRFLTKMKV 244
FDL + L +NL DRFL+K V
Sbjct: 218 FDLINETLFLTVNLIDRFLSKQNV 241
>At1g34460.1 68414.m04281 cyclin, putative strong similarity to
cyclin [Arabidopsis thaliana] GI:1360646
Length = 504
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 50 YLLLEQKSQPKLRLXAESEXGEVTTGARDGAXTVLRCLKVWFDLXADVLIGAINLFDRFL 229
Y +E++SQPK+ + ++E E R L + + F+L + L +N+ DRFL
Sbjct: 280 YKEVEKESQPKMYMHIQTEMNEKM---RAILIDWLLEVHIKFELNLETLYLTVNIIDRFL 336
>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
chloroplast, putative / NADP-dependent
glyceraldehydephosphate dehydrogenase, putative similar
to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
chloroplast precursor (EC 1.2.1.13) (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 399
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 355 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 450
IS ++CT ++ +V+ K G+ +GT++ T
Sbjct: 211 ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,243
Number of Sequences: 28952
Number of extensions: 324619
Number of successful extensions: 833
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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