Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0400.Seq
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    30   0.44 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.3  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   3.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   5.4  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   5.4  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   7.1  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.4  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  IVFYIILVVQARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 157
           I FY+     AR +I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 308 IPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +3

Query: 312 DLPLAGFHGEVLPGGQRSLFILFTHFHERRAQFVNIGANLFICAATRRFVFLDY 473
           DL +     E+L  G   L I  T F E R+ F     N  +CAA R+FV +DY
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFV-MDY 164


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 358  SAHYLFYSLIFMNVVPNLLIL-VPIFLFALLHAASYSLTILDTLGQNSLWV 507
            SA   +Y  I  ++VPN+  L  P  ++A   A +  LT   +LG + LW+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWI 2061


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 605 MMSTTGNSHDLGERRGPEDVPRLELDQGDEQTT 507
           M + T N HDL E   P+    +ELD   ++ T
Sbjct: 1   MSNVTENKHDLHENGVPDSAQPMELDVSKKEDT 33


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 388 FMNVVPNLLILVPIFLFALLHAASYSLTIL 477
           F+ V+PN+ +L+P F+   +  + Y L  +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 250 FVECRHWIVKQWEHVSNGTQHGDYADPPKSYVY--FIGNDV 134
           +VE R+ ++   EHV +  Q+ DY++   S +Y  F+  DV
Sbjct: 493 WVEARNAMLMAQEHVFDIMQNSDYSEFVNSEIYYRFLAQDV 533


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 618 VTAGLMSPFVYYYFVTWKYASGGTVQPQ 701
           V AGL +PF+Y++++       G + P+
Sbjct: 386 VCAGLCTPFIYWHYLKVNKKRNGVICPE 413


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 316 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 414
           S S++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 157 RSSLGGPRNHRAVYHWIR 210
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 146 NKIDVALWGVRVITVLCTIGYVFPLFNNPVSAFYKAYSRTLRLQRCGYIKEFQ 304
           N+I  A W +  ++   T  + FP  +  + AF +     +R QR   +++ Q
Sbjct: 94  NRIAPARWLITSLSTAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQ 146


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 408 FVNIGANLFICAATRRF--VFLDY-P*YSWSKFVVGGRLLISLVEFQSRNILRAAALAEI 578
           F + G  + + AA ++   +FL Y P  S  KF+  G+LL+  +    +N   A  + ++
Sbjct: 272 FNSSGKRVSVSAAAQQHKNLFLPYLPQASLPKFIGTGKLLVGTLHINRKNRSDAYVITDV 331

Query: 579 VAVP 590
           +  P
Sbjct: 332 LDEP 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,713
Number of Sequences: 5004
Number of extensions: 70470
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)