Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0400.Seq
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0355 - 22492162-22492311,22492414-22492698,22492798-224931... 30 2.4
04_04_0978 - 29856872-29858023 29 3.2
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 3.2
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 29 3.2
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 29 4.3
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 29 5.6
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 29 5.6
07_01_0285 - 2084560-2085246 28 7.4
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 28 7.4
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 7.4
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 9.8
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 28 9.8
01_02_0124 - 11365092-11365340 28 9.8
>09_06_0355 -
22492162-22492311,22492414-22492698,22492798-22493125,
22493523-22493674,22493878-22493969,22495948-22496107
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 322 RGRSLVLEFFDVAAALKSQRSRVRFVECRHWIV--KQWEHVSNGTQHGDYADPPKSYVYF 149
+GR LV F+D+ ALK R+ E +V ++WE GD++ V
Sbjct: 317 KGRPLV--FYDITLALKKLHKRIFLAEIGRHVVGDREWEVYRVHLGEGDHSSLRSKIVDG 374
Query: 148 IGNDVSFQGWD 116
+ N GWD
Sbjct: 375 VTN--MLMGWD 383
>04_04_0978 - 29856872-29858023
Length = 383
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 557 GRGARRDRGCSRSYSSWALFGHCGLDESV 643
G G R G SRS+ SW + GLDE++
Sbjct: 108 GSGGRHGHGQSRSHESWNVSPPSGLDETL 136
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGND-VSFQGW 119
VK W+HVSNG + + + K + + G++ S++GW
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAASWRGW 208
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 751 GRFLESVGRPRGVREPCCGCTVP 683
GRF++ G RG+RE C C P
Sbjct: 80 GRFVKDEGFRRGLREKCAACLAP 102
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 531 EFQSRNILRAAALAEIVAVPGRTHHGHCSVTAGLMSPFVYYYFVTWKYASGGTV 692
EF + +L+A LA++ + GR HGH + PFV V YA G V
Sbjct: 644 EFTAAALLQACGLAKVARL-GRMVHGHLVTSGFCCDPFVVGSLVN-TYAKVGDV 695
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 605 WALFGHCGLDES 640
WALF HCG+D+S
Sbjct: 960 WALFSHCGIDKS 971
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +2
Query: 509 SSAHLPGRVPVAEHPPGRGARRDRGCSRSYSSWALFGHCGLDESVRILLLRDVEVRVGRN 688
++A +P +P+ PP R ++ R WA DE +++L R+ + RV
Sbjct: 111 ATARVPFHLPIHPPPPEREEEEEKKGIRRAVPWA----AARDEETKVVLRREKKTRVPTR 166
Query: 689 RTTATRFANSAWAADGLKEAALG---WPRPLASGL 784
T A + L+ AA G W R +G+
Sbjct: 167 AETEL----EAGELERLRRAARGKERWARAKKAGI 197
>07_01_0285 - 2084560-2085246
Length = 228
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 609 AHDEYDREQPRSRRAPRPGGCSATGTRPG 523
A D+ DR +P R +PGG +++ + PG
Sbjct: 2 AGDDADRNRPGRGRESQPGGATSSSSPPG 30
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 237 DTGLLNNGNTYPMVHSTVITRTPQRATSILL 145
DT +N+GNT P + T+ + TP + T L+
Sbjct: 974 DTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 352 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 453
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 131
VK W+HVSNG + + + K + + G++++
Sbjct: 146 VKDWDHVSNGDKEVLWKELKKIFQFLDGSEIA 177
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 201 LDTCSHCLTIQCRHSTKRTRERCDFSAAATSKNSSTRDL 317
L CSH + I+C R E C F + K +RDL
Sbjct: 175 LPNCSHAMCIKCYRDWYRRSESCPF-CRGSLKRIRSRDL 212
>01_02_0124 - 11365092-11365340
Length = 82
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 781 PGSQGPRPPKGRFLESVGRPRGVREPCCGC 692
P + P PP G F GR RG C GC
Sbjct: 9 PSTSTP-PPPGAFRRCSGRVRGAGISCAGC 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,850,606
Number of Sequences: 37544
Number of extensions: 553421
Number of successful extensions: 1915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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