Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0400.Seq
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       30   1.9  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  30   2.5  
SB_634| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.3  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  29   3.3  
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)                 29   4.3  
SB_44861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)                      28   7.6  

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 207 TCSHCLTIQCRHSTK-----RTRERCDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLF 371
           TC HC  I  R+ST       T      +AAA+S +SS+       +H   L    ++L+
Sbjct: 165 TCQHCWRILARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHYHRHHLHHHHKALY 224

Query: 372 ILFTHFHERRAQ--FVNIGANLFICA 443
            L  H     AQ  + N G+ L  CA
Sbjct: 225 KLRQHTPTLLAQQCWRNTGSELGRCA 250


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 563  RGPEDVPRLELDQGDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGTNINKLGTTFMKM 384
            +G ++VP++    G  +TT H    P VS+     + +  +  +K GT  +K  T++ K 
Sbjct: 914  KGTKEVPKISSSHGSHETTPHINGAP-VSKTSNSTQNSTEATTRKTGTPTSK--TSYSKQ 970

Query: 383  S 381
            S
Sbjct: 971  S 971


>SB_634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 793 AEPKPGSQGPRPPK-GRFLESVGRPRGVREPCCGCTVPPDAYF 668
           A P+P   GP+    G F + V R + +   CC C V P   F
Sbjct: 54  AGPRPRRSGPQQDNFGGFAQRVPRHQEILSCCCRCCVKPHPPF 96


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 774 AKGRGHPRAASLSPSAAHAEFAN 706
           A+GRG PRA S + +    EFAN
Sbjct: 430 ARGRGRPRAKSTATTGTEVEFAN 452


>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
          Length = 1158

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -1

Query: 784 KPGSQGPRPPKGRFLES----VGRPRGVREP 704
           +PG QGP  P+   L+S    V RPR +R P
Sbjct: 740 EPGKQGPSTPEAMILQSPPNAVERPRTIRRP 770


>SB_44861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 666 WKYASGGTVQPQQGS--RTPR 722
           WKYA  GTV P QG   +TPR
Sbjct: 660 WKYAGWGTVHPVQGKTIQTPR 680


>SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)
          Length = 318

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
 Frame = +3

Query: 525 LVEFQSRNILRAAALAEIVAVPGRTHH----GHCSVTAGLMSPFVYYYFVTWKYASGGTV 692
           LVE   +N  R  A       P   HH    G      G     V  Y  TWK A  GTV
Sbjct: 99  LVEHHRKNYPRLPATIRFNPDPSVAHHHRKQGRPVPVLGKRGEKVDAYKGTWKSAGCGTV 158

Query: 693 QPQQGS--RTPR 722
              QG   +TPR
Sbjct: 159 HRVQGKTIQTPR 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,916,612
Number of Sequences: 59808
Number of extensions: 572608
Number of successful extensions: 2104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2102
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)