Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0400.Seq
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    30   1.5  
At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria...    29   2.7  
At1g54380.1 68414.m06200 spliceosome protein-related contains Pf...    28   6.2  
At5g61160.1 68418.m07673 transferase family protein similar to a...    28   8.2  
At2g46920.2 68415.m05861 protein phosphatase 2C family protein /...    28   8.2  
At2g46920.1 68415.m05860 protein phosphatase 2C family protein /...    28   8.2  

>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 145 GNDVSFQGWDAFWWTSVAC 89
           GN V  QGW+  WW+   C
Sbjct: 38  GNKVCTQGWECSWWSKYCC 56


>At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial
           (SODA) / manganese superoxide dismutase (MSD1) identical
           to manganese superoxide dismutase [Arabidopsis thaliana]
           gi|3273751|gb|AAC24832
          Length = 231

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 795 WRNPSPEAKGRGHPRAASLSPSAAHAEFANLVAVVR 688
           W+N +P ++G G P   SL  SA  A F +L  +V+
Sbjct: 107 WKNLAPSSEGGGEPPKGSLG-SAIDAHFGSLEGLVK 141


>At1g54380.1 68414.m06200 spliceosome protein-related contains Pfam
           domain, PF04938: Survival motor neuron (SMN) interacting
           protein 1 (SIP1)
          Length = 515

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 674 VLPRHEVVVYERTHQARSDRTMPMMSTTGNSHDLGERRGPEDVPRLELDQGDE 516
           V+  +E +VY + +++     +   + +GN  +LG   G ED P    D  D+
Sbjct: 230 VVTEYESLVYVKNYKSSKSNRVRGRTESGNEENLGTEEGTED-PEDYTDDNDD 281


>At5g61160.1 68418.m07673 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 452

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 291 SKNSSTRDLPLAGFHGEVLPGGQRSLFILFTHF 389
           +++SS+RD+    F+  +LP  +RSL ++ THF
Sbjct: 47  TESSSSRDV----FYSSILPKLERSLSLILTHF 75


>At2g46920.2 68415.m05861 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 590 GNSHDLGER-RGPEDVPRLELDQGDEQTTTHNEF*P 486
           GN   +G + R  E + R+ELD+  E++  HN+  P
Sbjct: 613 GNDEGIGHKSRSRESLVRIELDRISEESPIHNQATP 648


>At2g46920.1 68415.m05860 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 590 GNSHDLGER-RGPEDVPRLELDQGDEQTTTHNEF*P 486
           GN   +G + R  E + R+ELD+  E++  HN+  P
Sbjct: 613 GNDEGIGHKSRSRESLVRIELDRISEESPIHNQATP 648


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,073
Number of Sequences: 28952
Number of extensions: 396624
Number of successful extensions: 1240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)