Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0399.Seq
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    33   0.051
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   4.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.7  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.7  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   7.7  

>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = -3

Query: 450 FQTHVYPWHQAQHSRPVTHLCYF----HI*TGNIDHLKHGSALLAFP----YMLQLQLKS 295
           F  H Y W Q QH  P  H  Y           I+ L+HG A++ FP          + S
Sbjct: 377 FGGHCYYWDQKQHDHPYEHDLYVKGWNQAWEDYIEFLQHG-AMIGFPRAWTQKRMTSISS 435

Query: 294 ASHWHHQKSL*RVFMSLAR 238
           AS W ++  +   ++ L R
Sbjct: 436 ASAWEYRDGMNAAWLHLER 454


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 ARNTFVLFSYLNR*YRSFKTRVSITGLSIYAAAA 305
           A N + LF+YLN  Y  F T  ++    + +AAA
Sbjct: 87  ALNVYELFTYLNHFYDVFATFCTVKTCPVMSAAA 120


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 37  LVTSLPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPG 177
           L  S  +  S D SG+N+A T  A   T++  +++ +      D PG
Sbjct: 271 LAASTASTGSTDSSGSNIANTLIAPTPTISPPSANTVGNPSPADTPG 317


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 224  PYNPRKFRGLFTRDTRPGISQRTSVSILS 138
            P +P    G F+R T P ISQR  V++LS
Sbjct: 1324 PASPVSNSG-FSRQTYPNISQRQGVNMLS 1351


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 273 KSL*RVFMSLARTMMCSIQSEKIQR--VVHTGH 181
           K+L   F  + +T+ C I +E +QR    H GH
Sbjct: 70  KTLLETFQKIKKTLECPICTEALQRPFTTHCGH 102


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 540 IRFFILIPIRSFLCLSQYKTRW 475
           IR ++L P+RSF+  S ++TR+
Sbjct: 242 IRHYLLQPLRSFVSDSSWRTRY 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,350
Number of Sequences: 5004
Number of extensions: 77848
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)