Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0399.Seq
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 31 1.5
11_06_0117 + 20302795-20304816 30 2.0
09_04_0292 - 16436918-16439233 30 2.0
06_03_0449 + 20907491-20910146,20910313-20910782 30 2.7
01_03_0264 - 14419381-14419431,14419807-14419875,14420771-144208... 30 2.7
03_02_0686 + 10407800-10409501,10409611-10410284 29 3.5
12_02_1222 + 27145264-27148287 29 4.7
10_08_0332 - 16843295-16843356,16843884-16846656 29 6.2
05_05_0220 + 23380290-23381581,23381997-23383458 29 6.2
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51... 28 8.1
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 28 8.1
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723 28 8.1
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 7 YLNPNEV---LTKLVTSLPALVSLDISGTNLAGTGAATLSTVNDST-SDKMETEVRCDIP 174
+L+ NE+ + L+ +LP L LD+S +NL+G L T+ T D ++ P
Sbjct: 289 FLDGNELVGTIPSLLGNLPMLSELDLSDSNLSGHIPVELGTLTKLTYLDLSFNQLNGAFP 348
Query: 175 GLVSRVNNPLNFLGL 219
V + L FLGL
Sbjct: 349 AFVGNFSE-LTFLGL 362
>11_06_0117 + 20302795-20304816
Length = 673
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 7 YLNPNEVLTKLVTSLPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPGLVS 186
YLN N ++ ++ T L LDIS L+G A+ T + ++ IP +
Sbjct: 526 YLNSNRIIGEVPTLPTNLTYLDISNNILSGLVASNFGAPRLDTMNLSSNSIQGQIPSSIC 585
Query: 187 RV 192
R+
Sbjct: 586 RL 587
>09_04_0292 - 16436918-16439233
Length = 771
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 528 ILIPIRSFLCLSQYKTRWHFQIFGCVFQTHVYPWHQAQHSRPVTHLCYFHI 376
+ I + S+ LS + WH C + V WH+A+ P+ LC+F++
Sbjct: 396 LYIFLESYQLLSLVLSDWHKVKLMCQYVLKV-SWHRARVDTPLKVLCHFNV 445
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 46 SLPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPGLVSRVNNPLNFLG 216
+LPAL LD+SG L G A L +N ++ + + ++P + +FLG
Sbjct: 556 TLPALTILDLSGNELTGDIPADLGYLNFNSLNVSSNRLTGEVPLTLQGAAYDRSFLG 612
>01_03_0264 -
14419381-14419431,14419807-14419875,14420771-14420817,
14421340-14422474
Length = 433
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 40 VTSLPALVSLDISGTNLAGTGAATLSTVNDSTSDK-METEVRC 165
V LPAL +L +S +AG A S + D+ DK +E E C
Sbjct: 325 VCGLPALTNLSVSYNFIAGEDAQCSSALLDAKLDKSLEDEANC 367
>03_02_0686 + 10407800-10409501,10409611-10410284
Length = 791
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 7 YLNPNEVLTKLVTSLPALVSLDISGTNLAGTGAATLSTV 123
Y N + +TSLP LVSL +S NL+G T+ +
Sbjct: 166 YNNLTGAVPSSLTSLPFLVSLQLSSNNLSGEVPPTIGNL 204
>12_02_1222 + 27145264-27148287
Length = 1007
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 46 SLPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIP 174
+LP L SLD+SG +L+G A+L+ + S+ + + ++ +P
Sbjct: 529 TLPRLNSLDLSGNDLSGAVPASLAALKLSSLNMSDNKLVGPVP 571
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 46 SLPALVSLDISGTNLAGTGAATLSTVNDSTS 138
+LPAL LD++G N G A+++ + TS
Sbjct: 96 ALPALAELDLNGNNFTGAIPASITRLRSLTS 126
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +1
Query: 40 VTSLPALVSLDISGTNLAGT--GAATLST---VNDSTSDKMETEVRCDI 171
+ SLP+L SLD+SG LAG+ G S+ V D + + +E E+ D+
Sbjct: 158 IWSLPSLRSLDLSGNQLAGSVPGGFPRSSSLRVLDLSRNLLEGEIPADV 206
>04_01_0046 +
510721-510790,511048-511121,511459-511729,511865-512243,
512550-512771,513130-513259,514311-514367,514756-515046
Length = 497
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 49 LPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPGLVS 186
+P +++ GTN+ T TL DK+ T+V C I G S
Sbjct: 29 IPFKTLINLCGTNMQFTLNVTLEESIKERRDKLVTKVHCMIQGYTS 74
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 28 LTKLVTSLPALVSLDISGTNLAG----TGAATLSTV 123
L K V SLP L LD+S TNL G TG A S V
Sbjct: 202 LPKAVWSLPELSVLDVSRTNLTGALPDTGLALPSNV 237
>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
Length = 757
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 40 VTSLPALVSLDISGTNLAGTGAATLSTVNDST 135
++ L AL LD+SG NLAG A +S ++ T
Sbjct: 133 ISMLIALTVLDLSGNNLAGAIPANISMLHTLT 164
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 40 VTSLPALVSLDISGTNLAGTGAATLSTVNDST 135
++ L AL LD+SG NLAG A +S ++ T
Sbjct: 181 ISMLIALTVLDLSGNNLAGAIPANISMLHTLT 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,615,146
Number of Sequences: 37544
Number of extensions: 501104
Number of successful extensions: 1377
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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