Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0399.Seq
(845 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06) 42 8e-04
SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9) 29 3.6
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021) 29 6.3
SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 6.3
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 28 8.3
SB_38887| Best HMM Match : EGF_CA (HMM E-Value=6.2e-31) 28 8.3
SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_17677| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)
Length = 583
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +3
Query: 270 ISGDANEKQILIAAAAYMERPVMLTRVLNDLYYLFRYENNTNVLRALNVVLDAMDRHVSE 449
I+G+A E+QIL++ Y ER +T L L+ + + L +VL M++H +
Sbjct: 314 ITGEATEQQILLSLCCYPERSSYMTESLRRLFQISKNWTQAR-FEVLQIVLPPMEKHPKD 372
Query: 450 KHIQISGSATLFYIVKGKE 506
+Q++ + ++K E
Sbjct: 373 LRVQMAATRIANLVLKAME 391
>SB_25375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = -2
Query: 727 NXLNXSLXGFTSVTXLREYLHSSFIFKRHIIRNLEFTESKTSIPHHGVITKMCIHAIQQC 548
N N +L + T H+ I H + N+ + + T + H ++T MC H +
Sbjct: 72 NMCNHTLTNMCNHTLTNMCNHTLTIMYNHTLTNM-YNHTLTIMYKH-ILTTMCNHTLTNM 129
Query: 547 CNYTLLHLNSNTFFSL 500
N+TL + ++T ++
Sbjct: 130 YNHTLTTIRNHTLATM 145
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 667 HSSFIFKRHIIRNLEFTESKTSIPHHGVITKMCIHAIQQCCNYTLLHLNSNT 512
H+ I H + + + T++ +H +T MC H + CN+TL ++ ++T
Sbjct: 44 HTLTIMYNHTLTTM-CNHTLTTMCNH-TLTNMCNHTLTNMCNHTLTNMCNHT 93
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -2
Query: 622 FTESKTSIPHHGVITKMCIHAIQQCCNYTLLHLNSNTFFSL 500
+ + T++ +H +T MC H + CN+TL ++ ++T ++
Sbjct: 50 YNHTLTTMCNH-TLTTMCNHTLTNMCNHTLTNMCNHTLTNM 89
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -2
Query: 718 NXSLXGFTSVTXLREYLHSSFIFKRHIIRNLEFTESKTSIPHHGVITKMCIHAIQQCCNY 539
N +L + T Y H+ H + + + T++ +H +T MC H + CN+
Sbjct: 35 NHTLTTMCNHTLTIMYNHTLTTMCNHTLTTM-CNHTLTNMCNH-TLTNMCNHTLTNMCNH 92
Query: 538 TLLHLNSNTFFSL 500
TL + ++T ++
Sbjct: 93 TLTIMYNHTLTNM 105
>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = -2
Query: 463 IWMCFSDTCLSMASSTTFKARNTFVLFSYLNR*Y---RSFKTRVSITGLSIYAAAAIKIC 293
+++C+S S+ ++ +R+ FV +SYL+R S+ +R I S Y + ++ +C
Sbjct: 19 LFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRGMIVYYS-YLSPSMIVC 77
Query: 292 FSLASPEITLAGIHVSCT 239
+S+ S + + SC+
Sbjct: 78 YSILSRSRFVCYSYFSCS 95
>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
Length = 253
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -2
Query: 718 NXSLXGFTSVTXLREYLHSSFIFKRHIIRNLEFTESKTSIPHHGVITKMCIHAIQQCCNY 539
N +L + T Y H+ H + + + T++ +H +T MC H + CN+
Sbjct: 3 NHTLTSMCNHTLATMYNHTLTTMCNHTLTTM-CNHTLTAMCNH-TLTTMCNHTLTTMCNH 60
Query: 538 TLLHLNSNTFFSL 500
TL + ++T ++
Sbjct: 61 TLTAMCNHTLTTM 73
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 595 HHGVITKMCIHAIQQCCNYTLLHLNSNTFFSL 500
H+ +T MC H + CN+TL + ++T ++
Sbjct: 93 HNHTLTTMCNHTLNTMCNHTLTTMCNHTLTTM 124
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 613 SKTSIPHHGVITKMCIHAIQQCCNYTLLHLNSNTFFSLPFTI 488
++T++ H +T MC H + CN+T+ + + T + P +
Sbjct: 257 TRTTMCKH-TLTTMCNHTLTTMCNHTMTTMCNYTHYKTPLCL 297
>SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
Length = 923
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 34 KLVTSLPALVSLDISGTNLAGTGAATL 114
+L+ +LP L+S+D+SG N++ G ++L
Sbjct: 331 ELLGTLPNLISIDMSGCNISDHGVSSL 357
>SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1063
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = -2
Query: 244 CTHHDVFHTIRENSEGCSHGTLGLVYHSVLQFPFYQRCCH*QLTMLQPLFQLNLCLICQV 65
C H + + + C HGT+ LV Q P + CCH + + + C + V
Sbjct: 578 CCHVTMVTVAQPGTRDCCHGTIVLVAQPAAQ-PGTRDCCHGTIVSVSQPGTRDCCHVTMV 636
Query: 64 KPEQ 53
Q
Sbjct: 637 TAAQ 640
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 389 HKCVTGLECCA*CHG*TCV*KT--HPNIWKCHLVLYCE 496
H C T EC G TC KT H + ++CH V C+
Sbjct: 363 HNCSTTAECLNIVSGYTCTCKTGYHGDGYQCHDVNECQ 400
>SB_38887| Best HMM Match : EGF_CA (HMM E-Value=6.2e-31)
Length = 131
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 389 HKCVTGLECCA*CHG*TCV*KT--HPNIWKCHLVLYCE 496
H C T EC G TC KT H + ++CH V C+
Sbjct: 54 HNCSTTAECLNIVSGYTCTCKTGYHGDGYQCHDVNECQ 91
>SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 607 TSIPHHGVITKMCIHAIQQCCNYTLLHLNSNTFFSL 500
T++ +H ++T MC H + CN+TL + ++T ++
Sbjct: 55 TTMYNH-ILTTMCNHTLTAMCNHTLTTMYNHTLTTM 89
>SB_17677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 238 HHDVFHTIRENSEGC--SHGTLGLVYHSVLQFPFYQRCC 128
H V H + E S G L +VY S L+F + RCC
Sbjct: 621 HDSVSHLDIDTKEEIHLSQGILTIVYTSKLEFATFDRCC 659
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,273,229
Number of Sequences: 59808
Number of extensions: 589062
Number of successful extensions: 1423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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