Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0399.Seq
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   4.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 744 HFNRMPIDGKPKRXPGDQGAIGE 812
           H+ R     +P R   DQG IGE
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGE 268


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 339 LTRVLNDLYYLFRYENNTNVLRAL 410
           +T VL+  YY + Y N T  L ++
Sbjct: 21  MTNVLDFDYYFYDYSNRTQALESI 44


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 121 VNDSTSDKMETEVRCDIPG 177
           +N +   K+E E+R D+PG
Sbjct: 123 INATELQKIELEIRRDLPG 141


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 664 SSFIFKRHIIRNLEFTESKTSIPHHGVI 581
           S  I  RH  RNLE TES+   P   V+
Sbjct: 222 SCVIASRH--RNLEATESENVRPRRNVL 247


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 115  STVNDSTSDKMETEVRCDIPGLVSRVNNPLNFLGLYG 225
            S+ NDS      +E  CD   LV+R N  +N  G  G
Sbjct: 1872 SSFNDSKESNEISEAECDRDQLVNR-NYGVNARGKDG 1907


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 568 IHAIQQCCNYTLLHLNSNTFFSLPFTI 488
           I ++   CNY+  + N+N +  L + I
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYNI 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,632
Number of Sequences: 438
Number of extensions: 5553
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)