Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0399.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56880.1 68418.m07098 expressed protein                             32   0.55 
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    31   1.3  
At4g04220.1 68417.m00598 disease resistance family protein conta...    30   1.7  
At5g29070.1 68418.m03617 expressed protein                             29   5.1  
At3g09380.1 68416.m01113 hypothetical protein contains Pfam prof...    29   5.1  
At5g66710.1 68418.m08409 protein kinase, putative similar to pro...    28   6.8  
At1g18380.1 68414.m02296 expressed protein                             28   9.0  

>At5g56880.1 68418.m07098 expressed protein 
          Length = 159

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 16  PNEVLTKLVTSLPALVSLDISGTNLAGTGAATLSTVND 129
           P+E+++ + +S P + + +I GTN +G G+  +  ++D
Sbjct: 37  PDEIMSLVESSSPTMTTTEIEGTNFSGEGSFRVRFIDD 74


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 10  LNPNEVLTKLVTSLPALV--SLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPGL 180
           L+P   + +++ ++  +   ++ +SG N  G+G + +    D   ++ E ++R D+PGL
Sbjct: 89  LSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGL 147


>At4g04220.1 68417.m00598 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
           pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 811

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 49  LPALVSLDISGTNLAGTGAATLSTVND-STSDKMETEVRCDIP--GLVSRVNNPLNFLGL 219
           L  + SLD+S  NL G    TLS +++ +T D    +++  IP    + R+NNP     +
Sbjct: 689 LEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNP----NI 744

Query: 220 YGTHHGAC 243
           Y  + G C
Sbjct: 745 YANNSGIC 752


>At5g29070.1 68418.m03617 expressed protein 
          Length = 307

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 180 SVPCEQPSEFSRIVWNTSW-CVQET*IPAKV 269
           SV   QP  F R  W+ +W  VQ T I AK+
Sbjct: 136 SVAAPQPQNFGRSTWSMTWSMVQHTPISAKL 166


>At3g09380.1 68416.m01113 hypothetical protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 156

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 25  VLTKLVTSLPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPGLVSRVN 195
           +L KLV SLPA   +D+    +A       +TVN    DK       + P LV+ +N
Sbjct: 97  ILVKLVQSLPARFKVDV---RVAPGSHDKETTVNKQLGDKERVTAALENPELVALLN 150


>At5g66710.1 68418.m08409 protein kinase, putative similar to
           protein kinase ATN1 GP|1054633 [Arabidopsis thaliana]
          Length = 405

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 28  LTKLVTSLPALVSLDISGTNLAGTGAATLSTVNDSTSDKMETEVRCDIPGL 180
           +T  +T+L   +S D   T+      A ++T  DSTS  ++  V CD PGL
Sbjct: 326 ITYSLTNLLRSLSSDTDATS--SNSKANIAT-EDSTSSLVQERVVCDCPGL 373


>At1g18380.1 68414.m02296 expressed protein
          Length = 250

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 485 LYCERQRKERIGI-KMKKRIITALLDGMDAHLGDDTMMRNGCLTLCEFKIPN 637
           L CE  +   + I  +  R+++A L+     + DD+++  GCL +  F   N
Sbjct: 69  LSCEGDQNLTLAIGNITLRVVSANLEDHKISVADDSLLDGGCLNIWNFNGKN 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,008,034
Number of Sequences: 28952
Number of extensions: 405273
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)