Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0398.Seq
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.030
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.21
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.28
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.36
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 0.48
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.64
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 29 0.64
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.84
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 29 1.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 1.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 3.4
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 3.4
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 4.5
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 4.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 4.5
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 5.9
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 7.8
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.030
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
F DGK+ +T ++DG +K+WD +++ Y
Sbjct: 91 FHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 304 WVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTY 438
W H V L +S + + SC D VY N +DG VK++Y
Sbjct: 101 WTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGKVKRSY 144
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.36
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTE--TNVLKQEY 106
FS DGKY + + D +K+W+ + +NV Y
Sbjct: 466 FSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMY 498
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.9 bits (64), Expect = 0.48
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTP 112
+ DG+Y T D LK+WD T L YTP
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.64
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETN 88
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 29.5 bits (63), Expect = 0.64
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 NGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVK 429
NG +++YS + V KH + AL S K L S + D VY W++ G
Sbjct: 209 NGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDLNTGDAI 267
Query: 430 QTYN 441
TYN
Sbjct: 268 STYN 271
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 0.84
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTE 82
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHL-TSPPTCLQW 151
+E G + ++ DG LKI DT T + ++ D + SP + +QW
Sbjct: 68 NESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQW 113
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPDL--HLTSPPT 139
FS+ G++ T + DG ++ WD T +++ TP + LT PT
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPT 624
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTET 85
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 325 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 420
+A +T + W + +YS + D + W+ +DG
Sbjct: 269 TAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 334 VTALDWSRKYGLYSCTKDSRVYEWN 408
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 163
+S DG + + +G ++IW+ +T + +Y H +C+ W+ ++
Sbjct: 209 YSSDGGFLAIARVNGFVEIWNRKTKNNRCDY--KFHHDGDISCMAWSPIN 256
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
+S DG+ T DG++K+WD
Sbjct: 347 YSSDGQRIITGADDGKIKVWD 367
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTET 85
S+DG+ ++ ++D +K+WD+ T
Sbjct: 474 SKDGRIIASASQDKTIKLWDSST 496
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Frame = +1
Query: 229 PMHSIRHYNGKLLIYSISQAKIINVWVPAKH-----FSAKV-----TALDWSRKYGLYSC 378
P++S+R + L+ S S I +W + FSA + AL SR L+SC
Sbjct: 394 PVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSR---LFSC 450
Query: 379 TKDSRVYEWNIE 414
+ D + +W+IE
Sbjct: 451 SLDGTIKQWDIE 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,656,558
Number of Sequences: 5004
Number of extensions: 77022
Number of successful extensions: 287
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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