Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0394.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736...    30   2.5  
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    30   2.5  
09_06_0222 - 21655236-21655841                                         29   4.3  
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    29   5.7  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    28   7.5  

>08_02_0193 -
           14073103-14073246,14073332-14073481,14073571-14073640,
           14073900-14074021,14074260-14074395,14074492-14074967
          Length = 365

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 475 LPRFNLLPLHSGCGYWSSISCSKLYKSVS*STIDAPMSRTKNRVLVQGLLEPVHAIGFCS 654
           LP   +L L  GCG             +    ID  + RTK+R    G+L P   +GF  
Sbjct: 170 LPDMRMLALF-GCGAVLLRGAGCTVNDLLDRDIDNKVERTKSRPFASGILTPTQGVGFLG 228

Query: 655 I 657
           +
Sbjct: 229 L 229


>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 396 VPYCSSCHMMVFPSILWC--LG*LYSLPLQLSEF*VELYFSSFVLLIFWQMLEECV 235
           VP+ S+C + +F  +  C  LG L  +PL +SE+ + ++  S     F+  + +CV
Sbjct: 393 VPFFSACFLAMFSILNLCFNLGLLPEIPLPVSEYDILVHVVSAEFQNFFSWVLKCV 448


>09_06_0222 - 21655236-21655841
          Length = 201

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 437 SCVDVYGRIRTSTCPVSTYYLCILAVGTGLVSAAA 541
           +CVDV+  + TSTCP     + +LA  +  V+AAA
Sbjct: 132 ACVDVW-LVSTSTCPSCRRAIVVLAAPSPAVTAAA 165


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 497 LCILAVGTGLVSAAANSINQYHEV 568
           LC    GT +V+A+AN++NQ  E+
Sbjct: 133 LCCTCAGTMMVAASANTLNQVFEI 156


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 321 VKNKVTQDTRVWKETPSYDRKSNTGQYCL---MLSKSRLTSLVVLTSMAGYALA 473
           V+ +     R WKETP     S    +C    +L K      ++L S  G+ +A
Sbjct: 317 VQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLLKMGAVLAILLASFTGFGIA 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,108,215
Number of Sequences: 37544
Number of extensions: 431389
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)